GT936

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

small or tiny plants
tiny, green seedlings

Anatomical entity /structure development stage	Phenotypes
seedling (PO:0008037)	decreased size (PATO:0000587) green (PATO:0000320)
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT936

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 3; Position: 22805412 [Map]; Strand: c
- AT3G61630.1 - [+] show detail - cytokinin response factor 6
  Distance: 0; Region: exon1 (CDS)

CGACCGTTTT CATCCCTATA CTGATCCTTT CGCTACTGAC TCGTCTAGCG 
ACGACGACGA CNACAACAAC GTCACGGTGG TTCCAAGAGT GAAACGATAC 
GTGAAGGAGA TTAGATTCTG CCAAGGTGAA TCTTCTTCCT CCACCGCGGC 
GAGGAAAGGT AAGCACAAGG AGGAGGAAAG CGTAGTGGTT GAAGATGACG 
TGTCGACGTC GGTGAAGCCT AAAAAGTACA GAGGCGTGAG ACAGAGACCT 
TGGGGAAAAT TCGCGGCGGA GATTANAGAT CCGTCGAGCC GTACTCGGAT 
TTGGCTTGGG ACTTTTGTCA CGGCGGAGGA AGCTGCTATA GCGTACGATA 
GAGCCGCGAT TC

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 167212 [Map]; Strand: c
  - AT2G01350.1 - [+] show detail - quinolinate phoshoribosyltransferase
    Distance: 0; Region: exon1 (5UTR)
  - AT2G01350.2 - [+] show detail - quinolinate phoshoribosyltransferase
    Distance: 0; Region: exon1 (5UTR)
  - AT2G01350.3 - [+] show detail - quinolinate phoshoribosyltransferase
    Distance: 0; Region: exon1 (5UTR)
  - AT2G01350.4 - [+] show detail - quinolinate phoshoribosyltransferase
    Distance: 0; Region: exon1 (5UTR)
  - AT2G01360.1 - [+] show detail - pentatricopeptide (PPR) repeat-containing protein
    Distance: -785; Region: promoter
Flanking Genome Sequence: GT936 - 5-prime edge
```
TTCTTTCTCT GAGAGCTGTT TATTATATTC ATCACAAAGA AGACCAACAA 
GAAACAGAGT TGAATCAGTT CTACAATGAT CTCTGTCTCT CGATTCTTGT 
CGCCTCAATT CTACGCAATA CCAAGGTTTT ATCCGACAAA ACCCAATCTT 
TTAAGTCTCT CCTTTGTGCA TCTCTCTCGA
```

AT2G01350.1

Model type: Protein coding
Short Description: quinolinate phoshoribosyltransferase
Curator Summary: At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.
Computational Description: quinolinate phoshoribosyltransferase (QPT); FUNCTIONS IN: nicotinate-nucleotide diphosphorylase (carboxylating) activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Nicotinate-nucleotide pyrophosphorylase (InterPro:IPR004393), Quinolinate phosphoribosyl transferase, N-terminal (InterPro:IPR022412), Quinolinate phosphoribosyl transferase, C-terminal domain (InterPro:IPR002638); Has 5853 Blast hits to 5853 proteins in 1914 species: Archae - 184; Bacteria - 3582; Metazoa - 59; Fungi - 129; Plants - 57; Viruses - 0; Other Eukaryotes - 1842 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G01350.2

Model type: Protein coding
Short Description: quinolinate phoshoribosyltransferase
Curator Summary: At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.
Computational Description: quinolinate phoshoribosyltransferase (QPT); FUNCTIONS IN: nicotinate-nucleotide diphosphorylase (carboxylating) activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Nicotinate-nucleotide pyrophosphorylase (InterPro:IPR004393), Quinolinate phosphoribosyl transferase, N-terminal (InterPro:IPR022412), Quinolinate phosphoribosyl transferase, C-terminal domain (InterPro:IPR002638); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G01350.3

Model type: Protein coding
Short Description: quinolinate phoshoribosyltransferase
Curator Summary: At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.
Computational Description: quinolinate phoshoribosyltransferase (QPT); FUNCTIONS IN: nicotinate-nucleotide diphosphorylase (carboxylating) activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Nicotinate-nucleotide pyrophosphorylase (InterPro:IPR004393), Quinolinate phosphoribosyl transferase, N-terminal (InterPro:IPR022412), Quinolinate phosphoribosyl transferase, C-terminal domain (InterPro:IPR002638); Has 5825 Blast hits to 5825 proteins in 1916 species: Archae - 184; Bacteria - 3588; Metazoa - 59; Fungi - 124; Plants - 57; Viruses - 0; Other Eukaryotes - 1813 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G01350.4

Model type: Protein coding
Short Description: quinolinate phoshoribosyltransferase
Curator Summary: At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.
Computational Description: quinolinate phoshoribosyltransferase (QPT); FUNCTIONS IN: nicotinate-nucleotide diphosphorylase (carboxylating) activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Nicotinate-nucleotide pyrophosphorylase (InterPro:IPR004393), Quinolinate phosphoribosyl transferase, N-terminal (InterPro:IPR022412), Quinolinate phosphoribosyl transferase, C-terminal domain (InterPro:IPR002638); Has 5862 Blast hits to 5862 proteins in 1918 species: Archae - 184; Bacteria - 3596; Metazoa - 59; Fungi - 124; Plants - 57; Viruses - 0; Other Eukaryotes - 1842 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G01360.1

Model type: Protein coding
Short Description: pentatricopeptide (PPR) repeat-containing protein
Computational Description: pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G01390.1); Has 425 Blast hits to 414 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G61630.1

Model type: Protein coding
Short Description: cytokinin response factor 6
Curator Summary: CRF6 encodes one of the six cytokinin response factors. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves.
Computational Description: cytokinin response factor 6 (CRF6); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 5 (TAIR:AT2G46310.1); Has 5693 Blast hits to 5625 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5682; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).
Link: InterPro Scan - TAIR