K00139

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00139

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00139

Determination of introduced cDNA(s)

J033081C08 - Rice Full-length cDNAs - Original: J033081C08

full reading [+] show sequence

GGTACCCATC CCATCTGCAA ACCGAATTTC CGATCGATCC TCCCTTCCCT 
TCCCTTCCCT TCCCTTCCTC CTGCGCCGCC GCCGCCGCCT CTCATCTTCG 
GTTCCAATCC AATCCAAGTG GCAATTTCTT CGGGTTCAGC AATGCCCAAC 
GTTAGGTCCT CCCCTGTCGC AGATCTTCCT GGATGGCCAT TGTTTTCGCC 
TCCTAAGCTT CAGTTGCAAA AGTGTACCAA GTGTCCCAGG GAATTTTGCT 
CCTCAATCAA CTACAGGCGC CATACCCGTG TTCACCGCCG AACTCTCCAA 
ATTGAAAAGG ATTTCCTGAA GAACAGAGAC AATATTGCTG CATTCTGGGA 
CAAACTTACG TTGGATCAGG CCAAAACAAT TTTGTCCTTG GCAGATGTGG 
ATATAGAGGG TGTCACTGGT CCTTCCATTT TAGCAGCACT GTCCACATGG 
ATGTGTAAGC CGGGGTATGC TTCATTACCG CTGCCATATG CCAGAGCTGG 
CAATCAACTT CTGGACCTAA TTGAAACAAC AGCTTCAAGG TTACCTGTAT 
CATCGAATGA ACTATTTAGC ATGCTTGACG AAGCAAGTGA GAATACGTTT 
CTCTCTACTA ACCCAACCGC CTGTATACAA AAGTTTATAT TTAACGGGGA 
GGCTGACAAA GTTGCACCTG AGTTGAAAAA TGCTGTTGCA TGCACTAGTT 
ATATGCTTGA ACAAACACTG GTCGAAGCAT GGTCTGCTGA TAAGGCTGCT 
GAAGCATTAA GATGCCAGAA GTTGCTCGTG GAGGAAGAGG AAGCTGCTCA 
GAAAAGGCAA GCTGAACTGA TAGAAAGGAA ACGGATGAAG AAACTGAGGC 
AGAAAGAACA GAGATTGAAA GACTTGAAGG ATGAGGATGT CACAGACCGT 
TTTCCTGGAT CTGTGGATGG GACAACAGAT TCTTCTGGAA TACTAAGTCT 
GAAGGAAGCC ACTTCGGATC CTGGCCTTTA TGAGCAAGAA GATACACAGT 
TGCCAACGCC AGTGGCTTCG GAAGATAATA GTAGTTTTGC TGACCTACCT 
GTAGAACATG ACATTCATGA TCCAGGCCAT GAAGTGAATC CAAGTGTTAC 
TTTGAATCAA CAAGTCTTTT CAAGACATCG TGTAGGAAGA ACAGAAAACT 
TTGCCCAAAA TAGCTTTGCC TCTGGTGGTT CTGCAATTGG TTCAAAGCAT 
CCAGCTTCAG TAAGGCATTC ACATTACAGG GGTGCAAATG CCGGTGCAGT 
GTCAAATAGA AACAAAACAT GGACATGGAA AGTGCGAACT GAGATTGAAG 
AGCACAGCCC AAAAGATGAG TTGAATATAG ATGATGGGCA AGAGATTGTT 
CTGAACAAGA AGTCTCGTGT ATTAATAGGA TCCATAAGTG TTGCCATTGA 
AGACGGCAGC GAATGCTTGG AGGATAACCA ATATTCCAAG GAATACCCGA 
CTCCTGCTTC TCAATTGAAT ATTGGCAACC ATCCTGTAAC GAAGGTGATG 
CAGCCATTTA ACCATGGAGA AGAGGGAAAC GGATACAATG CTCATAATGA 
TGTTGAAGTT AGTATTACTC CAACAGCACA GGATCATTCT TCATCCGGCG 
TTATGACAGA TGGAAACAAT TGTTCAAGCT GCTGCAATGC AGGGTTGGCA 
GAGGGTGGAG GCTTACGAGG CGCCATCTTT TCCAGTAAAG AAGCAGCTGC 
CTTCCTTTCT CAAAGATGGA AGGAAGCAAT AAACGCAGAT CATGTGAAGC 
TTGTCCTGTG CCCTGAAGGC TGAAGCAAGT AACGTGGGAT CCTGTTGAGC 
CGGCGAAGTA GCAAGGGTTG AGTCTGCATC ATCAACCAAT CGGAGTTACT 
AGAACTAGTG AAGTTGGCAG AGGGGGGTTC CTGGCGTGTG GGCACTACTC 
CGTAGGAAAT GAAGTGATGG CTTTTTGTTA GACGAGCAGG GAATTAAGCT 
GCATTTTAAT TTGGTTTGGA GTAGATGACA GCCGGGGTTC ATGAACATTG 
AATTTATTTG TTTATATATA CAGTTATAGT TATATGATAT GACAGCCGGT 
GCGTGCGTTA ACATTGGATT CGTTGCAAAC ATGGACAAGA TTAGTGAATG 
TTGTGCTGGT TTTGGTTTTG GTTTTGGGTT GCATGTATGT AATTGTAATA 
TACTCCATCA TATCATATCA GGAGTAAATG GGGTATTTAC TGCTCCCTCC 
GTTTCTTATG TTTTTATTGT AAGGCGTATT TTGTTTCGTT TGATCGACGA 
TGACTGAAGA ATAGCAATTC AAGAGCAATG TTTTTTTTTT C

Gene models with high sequence identity

AT4G25610.1 [+] show detail - C2H2-like zinc finger protein
E-value: 2e-79; Score: 294.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Zinc finger, C2H2-type	9.286
Coil	coiled-coil	0
PatternScan	Zinc finger, C2H2-type	0

See the detailed result >

AT4G25610.1

Model type: Protein coding
Short Description: C2H2-like zinc finger protein
Computational Description: C2H2-like zinc finger protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); Has 1178 Blast hits to 1100 proteins in 218 species: Archae - 0; Bacteria - 148; Metazoa - 375; Fungi - 111; Plants - 98; Viruses - 2; Other Eukaryotes - 444 (source: NCBI BLink).
Link: InterPro Scan - TAIR