K00206

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00206

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00206

Determination of introduced cDNA(s)

  • J013130E06 - Rice Full-length cDNAs - Original: J013130E06

    full reading [+] show sequence

    Nucleotide sequence: J013130E06 - full reading
    GGGGACACTG TTCGAATTGC TTGGGAACTC TTCCATGGAA TCTGGATGGA 
    TACCTTATTG AGTAGTAAAT TTCTTAATAC AGCTCGCTAT CCAGATAGTG
    CTAGCTGTGA TTGTTTGGTG ATCAATCTAT TGGGATTGTG CCGACTGGAG
    CTGTTCGACA TTGCTTTGGT CTTTTGTTGA TTTGCCTGGA GTTCGGCAGT
    ATACAGCAAC CCTGGAGTGC ATGCAGTGGT TTCCTCATTT TTTAGGACCT
    GACTGCATTC TGTAGTGAGA ACTATCCTGC TAAATGCATA ATACTTGCAG
    GTGTTTTCTG TTGTATTGGC AACGTGATAG TTTTTGTGGT GCAAAACATT
    CAAGATGGGC GCCATGGACG TACAACTTGA GTCTACTGCT GTTCAACGTG
    GACAAGCTAA GATAAATGTG GAGGAACATG CTCTAGTTTC TCTGTTGTCT
    GATGAGAAGT ACGCAACTGA AAAGACCGAA GATGTGGACC CTGATGATTA
    TGAGAAACTT GAGGAAGGGA TAATGCAGTA TGGGTGTGCA CATTATCGAA
    GAAGGTGCCG CATTCGAGCT CCATGTTGCA ACGAGATTTT TGATTGTCGG
    CATTGCCACA ATGAAACAAA GAATTCAATT AAAATTGATG CTGTGAAGAG
    GCATGAACTC CCACGCCATG AAGTGCAGCA GGTTATATGC TCGTTGTGTG
    GCACGGAACA AGAGGTACGG CAAGTATGTA TCAGTTGTGG TGTATGCATG
    GGGAAGTACT TCTGTGAAGT GTGCAAGCTC TTTGATGATG ATGTTTCAAA
    ACAGCAATAT CATTGCAATG GTTGTGGAAT ATGCAGAATT GGTGGCAAGG
    AGAATTTCTT TCACTGCTCA AAATGCGGAT GCTGTTATTC TATAGTATTG
    AAGAACAGTC ATGCATGTGT TGAAGGAGCG ATGCATCATG ACTGTCCAAT
    CTGCTTTGAG TACCTTTTTG AATCAACCAA TGATGTTTCC GTCTTGCCCT
    GTGGTCATAC CATTCATGTC AAGTGCTTGC GAGAAATGGA GGAGCACTGC
    CAATTTGCTT GCCCGCTTTG CTCTAAATCT GTCTGCGACA TGTCGAAGGC
    ATGGGAGAGA TTGGACGAGG AACTAGCAAC GATATCTGAC ACCTGTGACA
    ATAAAATGGT GCGCATATTG TGCAACGATT GTGGGGCAAC ATCAGAGGTG
    CAGTTCCATT TGATTGCGCA CAAGTGCCAG AAGTGCAAGT CCTACAACAC
    CCGCCAGATC TGAAGTGGCG AAGTTTTGAT GTGATTCATT TTGTATGGGA
    AGAGAGCCCT GGGGGATGCT CATTTTGCAA CACAAATCCC GCTAACGCCT
    CTGGGAATCT GATGAGCTCT CGGTCGTTTT CTTGCTCATT GGATGCCTCA
    GCCGAGGCAA ATCACTCGCA TCTGAAATTC ATCTATGAAG TGGATGCTGT
    TCCCTCCTGT GTTCAATTTA TTACCTCACC ATGTCGCAGA CTCAGAGTCC
    TGTTCAGCTT AAGTTTCTAC TAGCACTAGC CGAGATAATA AGTGCACGTC
    TACTCAAGCT TCTGGGCATA AATGGTGGCT AGCTTGTGTG TTATGGTGTG
    TACTTGTTGA GTCTCGGGCA AACACTGTAA CGGTTAGTGG CATAGTATTA
    CTTCTTGCTC GTGTGCGTGT GTAGTAGGAT GGCGGATTGC AGGACGTGGG
    TGTTATTTAC TGGTAGGAAC TGTGGTACTT GCAGTAGCCA CCATTTCTCA
    TGTTCAATGC CGGTCCCATA TGCCGGTCTT GTTCAGTTCC TATACCTTGC
    TCGGTTGAGA AAAATGGCAA ATCTACCTCA GTTCATTTTG TTC

    Gene models with high sequence identity

    1. AT5G25560.1 [+] show detail - CHY-type/CTCHY-type/RING-type Zinc finger protein
      E-value: 5e-123; Score: 438.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, RING-type 11.943
    ProfileScan Zinc finger, CHY-type 26.125
    ProfileScan Zinc finger, CTCHY-type 34.79
    HMMSmart Zinc finger, RING-type 3.3e-06
    HMMPanther RING FINGER AND CHY ZINC FINGER DOMAIN CONTAI 4.8e-114
    HMMPfam Zinc finger, CHY-type 1.4e-16
    HMMPfam Zinc finger, C3HC4 RING-type 1.6e-05
    superfamily RING/U-box 9.5e-14

    See the detailed result >

    AT5G25560.1

    Model type
    Protein coding
    Short Description
    CHY-type/CTCHY-type/RING-type Zinc finger protein
    Computational Description
    CHY-type/CTCHY-type/RING-type Zinc finger protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: CHY-type/CTCHY-type/RING-type Zinc finger protein (TAIR:AT5G22920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR