K00329

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00329

Determination of introduced cDNA(s)

J023146P19 - Rice Full-length cDNAs - Original: J023146P19

full reading [+] show sequence

GACCATTTCC TTTCCTTTCG GCATCTCTCC TGCGCGGGCG AGTCGTCCTC 
CTCGTCCTCG TCGTCCCCTT TCTCTGCTCC CGCGAGATCT CACCCCCGCT 
GCGGCGACGC GGCCATGGCG GGGAGGAACT ACCACGGCTA CGGCGGCGGC 
GGCGGCGGGG GCATGTCCAT GGTGGTGGCG AGCACGCCGG GGCAGGAGCT 
GGCCCTCACC AACTGCGCGT ACGTCTCCTC CGCCGACATC CGCCGCTTCC 
CCAACGCCCT CGCCCTCGTC GGCGACGCCT TCGTCTTCAC CCTGCGTGCC 
CATGATGCTG TTTCTGCTGG AAGCATCGCA TTGAATGCCA TTCAGCGTCG 
CCAGACGAAG GTTTCAGCTG GGGATTCAAT CACTGTTAGC AGTTTTGCCC 
CTCCCGATGA TTTCAAATTG GCATTGCTCA CATTAGAACT AGAGTATACC 
AAGGCAAGAA CCAACCGAAA TGAGGAGCTG GATGCTGTTG TGCTTGCCCA 
ACAACTTCGA AGGAGATTTC TTGATCAGGT CATGACATCT GGGCAAAGAG 
TACCATTTGA ATTTTGTGGG ACAAACTATA TATTCACTGT CAATCAAGCT 
TTGCTAGATG GCCAAGAAAA TTCCACACCT TTGGACAGAG GATTCCTGTC 
AAGTGATACA TACATCATAT TTGAGGCTGC GCCTAATTCA GGAATTAAGG 
TAGTAAACCA AAAGGAAGCT GCTAGCAGCA AGCTTTTCAA GCACAAAGAG 
TTTAACCTTG AAAAGTTGGG GATAGGTGGA TTAAGTGCTG AATTCACAGA 
CATATTTAGA AGGGCATTTG CTTCAAGGGT GTTTCCTCCT CATGTTGTTA 
ATAAATTGGG CATCAAGCAT GTTAAAGGTA TATTGCTGTA TGGCCCCCCT 
GGTACTGGCA AAACTCTTAT GGCCCGTCAA ATTGGGAAAC TGCTGAACGG 
AAATGAACCC AAGATTGTAA ATGGACCTGA AGTCTTGAGC AAGTTTGTTG 
GAGAAACTGA GAAGAATGTG AGAGATTTGT TCGCTGATGC TGAAAATGAC 
CAGAAGACAC GAGGTGATCA GAGTGACCTC CACGTTATCA TTTTCGATGA 
AATTGATGCT ATCTGCAAGT CTAGAGGATC TACCAGAGAT GGTACGGGTG 
TACATGATAG CATTGTAAAT CAGCTCCTTA CAAAGATAGA TGGTGTTGAG 
GCATTGAATA ATGTGCTCCT CATTGGAATG ACCAATCGTA AGGATTTACT 
TGATGAAGCT TTACTGAGGC CTGGACGATT GGAAGTTCAT ATTGAGATAA 
ACCTGCCTGA TGAAAATGGC CGTTTGCAGA TTCTTCAAAT TCATACGAAT 
AAGATGAAAG AAAGCTCTTT CCTTTCCCCG AATGTTAATC TTCAGGAGCT 
AGCTGCACGG ACAAAGAACT ACAGTGGAGC AGAGCTGGAA GGTGTCGTCA 
AAAGTGCAGT CTCATATGCT TTGAACAGGC AGATAAGCAT GGATGACCTT 
ACCAAGCCTT TGGATGAAGA AAGCATTAAG GTTACTATGG ATGATTTTGT 
GAATGCACTT CATGAAATTA CCCCTGCATT TGGTGCTTCC ACTGATGACC 
TTGAAAGATG CAGGCTAAGG GGTATGGTTG ATTGTGGCAA GGCACATAGG 
CACTTGTATG AGAGAGGTAT GCTTCTTGTT GAGCAAGTTA AAGTTAGCAA 
AGGTAGTCCA CTTGTGACAT GCCTCTTGGA AGGTCCTGCT GGAAGTGGTA 
AATCGGCTTT GGCTGCTACT GTTGGCATTG ACAGTGATTT TGCTTACGTC 
AAAATTATAT CAGCAGAGAC AATGATTGGT TTCAGTGAAA GCAGCAAATG 
TGCACAGATT TGCAAGGTTT TTGAGGATGC ATACAAATCT CAGTTTGGCA 
TCATAATTCT AGATGACATC GAAAGGTTAC TGGAATATGT TGCCATTGGA 
CCACGCTTTT CAAACATAAT CTCACAAACT CTACTAGTCC TTCTCAAGAG 
GGTTCCTCCT AAGGGCAAGA ACTTGCTTGT TATTGGAACA ACAAGTGAAG 
TAGGCTTTCT AGAATCCATT GGTATGTGCG ACGTGTTCTC CGTGACATAC 
CATGTCCCCA AACTGAAAAA GGAGGATGCT ACAAAGGTGT TGCGGCATCT 
CAATGTGTTC GATGAAGCGG ACATTGATGC GGCTGCAGAA GCACTGGACG 
ATATGCCAAT CAAGAAGCTG TACACACTCG TTGAGATGGC TGCACAAGGG 
CCATCAGGAG GAAGCGCGGA AGCAGTCTAT GGTGGAGAGG AAAAGATAGA 
TATCAACCAC TTCTTTAGCA TCTTGAGTGA TATTATCCGC TATTAACTAC 
ACGGCGTCGG AATGAACCCT AGGTGACACC ATAGGAATTT AATTGCACAT 
TTCTTCTTAC TTCAAGTTCT CCCTTTTGCC ACCGTCGCCA GGGTATAGGG 
TTGTTTGATC TTTGAGGTTC GTGTCTCCTT GTTGTGCCGC TTTGAGCTTT 
TGTTGGAATG TTGTTATGAT TCGGACAGAG GTTATACCTT ACACGATGTA 
GCATGTTTCA ACCGTATGTT TCGATACTTT CCCAGCACAG AGTTGCACGA 
ATATGATTTT GGGTGGCTCC TTTCCGGCTT TCCCTCTGTG TTGTCTGTCT 
CGCTTGCTCT GTGCCTGTGT ATGTGGCGGC CTGAACCAAA CAAAAGAATC 
AGCTTTGTT

Gene models with high sequence identity

AT4G04910.1 [+] show detail - AAA-type ATPase family protein
E-value: 0; Score: 999.99

InterPro Scan Digest

Program	Description	E-value
HMMPanther	VESICULAR-FUSION PROTEIN NSF	0
Gene3D	Aspartate decarboxylase-like fold	3.4e-17
Gene3D	no description	1.7e-43
Gene3D	no description	9.5e-18
Gene3D	no description	7e-37
HMMSmart	ATPase, AAA+ type, core	1.1e-17
HMMSmart	ATPase, AAA+ type, core	6.2e-07
HMMPfam	ATPase, AAA-type, core	4.5e-38
HMMPfam	ATPase, AAA-type, core	1.5e-09
HMMPfam	ATPase, AAA-type, VAT, N-terminal	1.2e-10
HMMPfam	Cell division protein 48, CDC48, domain 2	1.9e-05
PatternScan	ATPase, AAA-type, conserved site	0
superfamily	P-loop containing nucleoside triphosphate hyd	8.2e-53
superfamily	P-loop containing nucleoside triphosphate hyd	8.6e-32
superfamily	Cdc48 domain 2-like	6.1e-24
superfamily	Aspartate decarboxylase-like fold	4.8e-21

See the detailed result >

AT4G04910.1

Model type: Protein coding
Short Description: AAA-type ATPase family protein
Curator Summary: N-ethylmaleimide sensitive factor
Computational Description: N-ethylmaleimide sensitive factor (NSF); FUNCTIONS IN: protein binding; LOCATED IN: vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30539 Blast hits to 27448 proteins in 3106 species: Archae - 1540; Bacteria - 10808; Metazoa - 4854; Fungi - 3637; Plants - 2891; Viruses - 27; Other Eukaryotes - 6782 (source: NCBI BLink).
Link: InterPro Scan - TAIR