K00333

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00333

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Original: K00333

Determination of introduced cDNA(s)

  • J023063A05 - Rice Full-length cDNAs - Original: J023063A05

    full reading [+] show sequence

    Nucleotide sequence: J023063A05 - full reading 
    GAGATATCTC TGAAATCTCC ACTTCTGACA GACGGTCCAC CGCCGGACCG 
    CGACGATGCA CCACCGCACC GCCCGACCAG CGCCGAGGCA CTACCGCACT 
    GCTGCCCACG GCCAGGCGCG GGTCCAGCCG CCTCCGACCG CCACCACAGC 
    GCCTCCACTG CCTGCAGGGA CGCCACCGCT ACCCGCCCGG CTACCTCCGT 
    TGCCGCCGCC AACACGCGAG TCTCCTCCTC CCTGATCGAG ATCGAGTCGA 
    CACACATACA CCACCAACCA CCGGCCGGCC GCCGCGCGCC GGTGAGCAGG 
    ATGGGGAGGC CGCCGTGCTG CGACAAGGTT GGGGTGAAGA GAGGGGCCAT 
    GGACGCCGGA GGAGGACCTG ATGCTGGTCT CCTACATCCA GGAGCACGGC 
    GCCGGCAACT GGCGCGCCGT GCCGACCAAC ACCGGGCTGA TGCGTTGCAG 
    CAAGAGCTGC CGGCTCCGGT GGACGAACTA CCTCCGGCCG GGGATCAAGC 
    GGGGGAACTT CACCGAGCAG GAGGAGAAGC TCATCGTCCA CCTCCAGGCT 
    CTCCTCGGCA ACCGTTCTCT ACCATAATCG TGGTCCACAA CATAGCCATG 
    CTTTCTGAAT ACTTTCAATG GATAATCAAC GAAGCTCTAC ACTACAAATT 
    TCTGCAATGA CAGGTACTAT TATTTTTTGT CTGAATTTTG CTTTGCTTGC 
    TACCTTTATT TTACCTGCAG ACAATTTATA TTTGGCCTGT GATAATACTC 
    TATTGTAGTG TATGTACTAA AAGGTGTTTT TATTCTATTT AATTAGGAGG 
    GATCATATGG AGGTTAGTTT ATCAACATTC TAAAGTATCA ATATTGATGC 
    TCATGATTTT GTTAACTATT GTTTATCACT GATTCTCTTT CATGCCCAAT 
    AGGTGATTTC ACCAATGAAA GATGGAACAT TTATTGATTG GGATATTGTT 
    GACAATATAT GGAATCATGC TTTCAAGCAG CGGCTATTGA TCAATCCTGA 
    GGAGCATCCT ATGTTGATAG TTGAACCATC TACAAACACA GGGCAGCAAA 
    GAGAGAAGTA TGTCCATATA TATTCTGTAT TTAAATTAAT TGTGTTGCTT 
    ACTTGTATAG AAAAACATCG CGTATAAGAA CTAGCTGATT TATAGCACAA 
    TTTTCTTCTA TGGCTCTTAT CAGTTATGAC TGAACTGTAT TGGTACCAGG 
    ATTTACTGCA TGATCAGACA TCCTAGGTAG TATATTGTAG ATAAAATTCA 
    ATTACATGGG AAATTTTCAG GCTGTAGTTG CTCTGTTTGT TGCTAACGAA 
    TAATTCAGTC CTATATTCGT CTTCTAGGGT TTTACATTCT TCCTCTCGGG 
    TCCTATATTC ATTTTCTGGG CTCCTGTATT TGTTCTCCGA GTCTTTCTCT 
    CGATTCCTAT ATTCGTCCTC TAGGGTCCTA TATCTAAATT TAACAATTCT 
    CAAATCCTTT TTATCATTTT TGTATCGTGG GTTGTCAAAA TAAGCAACTA 
    TAGTATTTCT ACGTAAAACA CCCATAAAGG GTATTTCAAT CGAAATCCCA 
    AAAACAGGAT ATTGGTTCTT TCGCTTGCTC TTGATGATAC TGTTTCTTCG 
    CATTTTGGCT AACAAATCTG AATTATTTTG AAGAATAGAA GGATAGACAA 
    AATTCAAATG ACCATTGGAC ATGATTCGAT CCGGCGTTGA ATAATCAAGA 
    ATTTCCCTAT CTTTTTTAAC AAAAGTATCC ATTCAGTCGT TCTTTTTATC 
    ATGCCATTTT TGTTATTTAT CAGTTTTTTT GGAACAAAAA CATGGTATTT 
    TCTTAGTTGA TGCTTTATGC AGGTATCTAC TGACTTTAAA GATCATGAAG 
    GCATAATGCA TATATCAGGG CTTTGACATG GTCTTCGTGC AAGAATAAAA 
    TGCCATTTTG TGTTTGTCAA CAAGTGTTAT TTATTTTTTA ATCAACAATT 
    GTTTGTCTTA CTTCAGGTTC ACTGATCTAA TGTTTTAGTC TTGCACCTAT 
    CACTTGCTAA TAATGTTGTA ACCTTGCCTT GCACCTATCA CTTGCTAATA 
    ATGTTGTAAC CTTGCTCCTG TCACTTGATA GTATTTCAAA TAATTTCCAA 
    TATTATTTGT GCAGATTATA TAAGGTCGCT TTAAGATTAC CTTGTTCAGA 
    TTCTTCGGCC GGCCCTATTC TTTACATTAT GCATTGGACT ATTGAGCCTG 
    GTTGTTTTTG GAGGACCAGG GAGCATGGCT GGAGTATCAT CTGGAGGATA 
    ACCTGATGTG GATTATTCAC TTGGCTTTGT CTTGACAAAT AATATATGAG 
    TTATTGCTTG TAAGAGAGGT CAAGAGAGGT CTTATTTTCT GATCTTATCC 
    TAGATTGTAT TAAGGACAAT TCATGTGGAT TAAGGAGAAT TCAGAAACAA 
    AATTTGG

    Gene models with high sequence identity

    1. AT3G47600.1 [+] show detail - myb domain protein 94
      E-value: 9e-39; Score: 35.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Homeodomain-related 1.3e-13
    Gene3D no description 8.1e-09
    superfamily Homeodomain-like 3.6e-21
    superfamily Actin-like ATPase domain 9.8e-13
    HMMPfam Myb, DNA-binding 3.6e-15
    HMMPfam Actin/actin-like 3.9e-15
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 24.239
    HMMPanther ACTIN-LIKE PROTEIN 6, ACL6 5.2e-18
    HMMPanther Actin/actin-like 5.2e-18
    HMMPanther DNA-DIRECTED RNA POLYMERASE BETA CHAIN 8.8e-57
    HMMPanther DNA-DIRECTED RNA POLYMERASE 8.8e-57
    HMMPanther R2R3-MYB TRANSCRIPTION FACTOR 3.2e-52
    HMMPanther Myb transcription factor 3.2e-52
    HMMSmart SANT, DNA-binding 3.8e-12

    See the detailed result >

    AT3G47600.1

    Model type
    Protein coding
    Short Description
    myb domain protein 94
    Curator Summary
    Encodes a putative transcription factor (MYB94).
    Computational Description
    myb domain protein 94 (MYB94); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 96 (TAIR:AT5G62470.2); Has 8929 Blast hits to 8284 proteins in 552 species: Archae - 0; Bacteria - 0; Metazoa - 836; Fungi - 491; Plants - 5808; Viruses - 4; Other Eukaryotes - 1790 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR