K00515

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00515

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Original: K00515

Determination of introduced cDNA(s)

  • J033125K07 - Rice Full-length cDNAs - Original: J033125K07

    full reading [+] show sequence

    Nucleotide sequence: J033125K07 - full reading 
    GGCATCATCG CTCGCAGTCG CAGCACAAAA ACATTTCTCT CGCGAGTCGC 
    GAGTTGCACC GATCGAATTA AGGGTCGAAG ATGTTTGGGT TCGGGCACCA 
    CCACAACCAG GCACCGGCGG CGCCGTCGGA CCCGAACCAG ATCTTCAAGA 
    TCTTCTGCCG CGCCAACGAG AACTACTGCC TCACCGTCCG CGACAGCGCC 
    GTCGTCCTCG CCCCCGTCAA CCCCAAGGAC GAGCACCAGC ACTGGTTCAA 
    GGACATGAGG TTCAGCACCA AGGTGAAGGA CGGGGAGGGC ATGCCGGCGT 
    TCGCCCTCGT CAACAAGGCC ACCGGACTCG CCGTCAAGCA CTCCCTCGGC 
    CAGTCCCACC CCGTGAAGCT TGTGCCGTTC AACCCGGAGT ACGAGGACGC 
    GTCGGTGCTG TGGACGGAGA GCAAGGACGT CGGCAAGGGC TTCCGCTGCA 
    TCCGCATGGT CAACAACACC CGCCTCAACT TGGACGCCTT CCACGGCGAC 
    AAGGACCACG GCGGCGTCCG CGACGGCACC ACCGTCGTGC TCTGGGAGTG 
    GTGCAAGGGC GACAACCAGA GCTGGAAGAT CCTCCCCTGG GGCCCCGAGG 
    CTCACTCCTC CTCCCCCGGC GCCGCCACCG CCTGCACCAT CGGCGGCGTC 
    CCCGTCCACA CCGTCCGCGT CTTCTCCGCC GCAGGCGAGG ACTACTGCCT 
    CACCGTCCGC AACGGCACCG CCTGCCTCGC CCCCAAGAAC CCCAGGGACG 
    ACTACCAGCA CTGGATCAAG GACATGAGGC ACAGCAACAA GATCAGGGAC 
    GAGGAAGGCT ACCCGGCGTT CGCGCTGGTC AACAAGGTCA CCGGCGAAGC 
    CATCAAGCAC TCCACCGGAC AGGGCCACCC GGTGAAGCTG GTTCCCTACA 
    ACCCAGAGTA CCAGGACGAG TCTGTGCTGT GGACGGAGAG CAAGGATGTG 
    GGCAAGGGCT TCCGCTGCAT CCGCATGGTG AACAACATCT ACCTCAACTT 
    CGACGCCTTC CATGGCGACA AGGATCACGG CGGCATCCAC GATGGCACCG 
    AGATCGTGCT GTGGAAGTGG TGCGAGGGTG ACAACCAGCG CTGGAAGATC 
    CTCCCCTGGT AGATTCCGGG GAGGGGGAGC TGCATTGCAT TGCCATCGTC 
    GTCGCGTCTG CTCTGCTTCT ACTCTAGCTA ATAATTTGAT CGATCTGCTA 
    CCGAAATAAG ACCGTGTTCG TTCGTTCGAT CGATCGGAGT ATGGCAGTCA 
    ATGGTGTCCG TCCGTCCTCG AGTTTGTGTC AGTGTGTGTC CTTTTGCGAG 
    CCAGTGATTG CTATGAGATG AAACAGTGGG TGATGTAAGT GCAGGAGGAG 
    GGGCCATATG ATTCAGAAAT CTGATGCAAC TCATCTTGCT TTCCCCTGTA 
    CTCTCTACTT TTCGTATGCC TAATGAATGA ATTATGAATG GCTCATTTGT 
    CTCGACCCTG TTGTTTCCCC TTCTTCTGTT TGTGACGTGT AATTTTGCTG 
    AAAAAAAAGG CC

    Gene models with high sequence identity

    1. AT2G39050.1 [+] show detail - hydroxyproline-rich glycoprotein family protein
      E-value: 6e-56; Score: 215.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ricin B-related lectin 5.4e-28
    superfamily Ricin B-related lectin 7.1e-26

    See the detailed result >

    AT2G39050.1

    Model type
    Protein coding
    Short Description
    hydroxyproline-rich glycoprotein family protein
    Computational Description
    hydroxyproline-rich glycoprotein family protein; CONTAINS InterPro DOMAIN/s: Ricin B-related lectin (InterPro:IPR008997), Ricin B lectin (InterPro:IPR000772); Has 1708 Blast hits to 1449 proteins in 222 species: Archae - 0; Bacteria - 47; Metazoa - 514; Fungi - 386; Plants - 615; Viruses - 5; Other Eukaryotes - 141 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR