K00541

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00541

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00541

Determination of introduced cDNA(s)

  • J023002J24 - Rice Full-length cDNAs - Original: J023002J24

    full reading [+] show sequence

    Nucleotide sequence: J023002J24 - full reading 
    GTCCGATCCC CATCTATCCC GCGAGCGAGC ACGGGGCGCC GTCGTTCGCC 
    CTGCCGCATC AGTTTGGGGG TTCAACTGAA CCACCATGTC CTATGTTAGA 
    TCCGCCTGAA TTTTCGGGAG AAGCTTACTT GATTGAGAGA TGTCACTTGG 
    CTATGCCGAG AAGCTATCCT ACCGAGAGGA TGTGGGAAAT GTCGGCATGC 
    CTGAGATCTT CGACTCTCCT GAACTCCTCC ACAAGAAGAT AGAAGAGCTT 
    GCAGTCATGG TGCGAGAGAG TAAGCATTTG GTGGTGTTTA CTGGAGCAGG 
    CATATCAACT TCATCAGGCA TACCTGACTT CCGAGGGCCC AAAGGCGTGT 
    GGACACTGCA GCGTTCAGGA AAAGGTGTTC CTGGTGCATC ACTGCCGTTT 
    CACCGAGCTG TTCCAACCTT GACTCATATG GCACTGGTTG AATTGGAAAA 
    AACAGGACGA TTAAAGTTTG TCATAAGCCA GAATGTTGAT AGCTTACATC 
    TCCGCTCTGG CCTCCCAAGG GAGAAGCTGG CTGAATTGCA TGGAAATTCT 
    TTCAAGGAGA TCTGCCCAAG CTGTAAAAAG GAGTACCTTC GTGATTTTGA 
    AATTGAGACG ATAGGACTGA AGGATACTCC AAGGCGTTGT TCTGATAAGA 
    ACTGTGGAGC TAGATTAAAA GACACAGTTC TTGATTGGGA GGATGCTTTA 
    CCCCCTGAGG AGATGGATGC TGCCAAGGAG CAGTGTCAAA AAGCTGATCT 
    TGTCCTATGT TTAGGAACTA GTCTGCAGAT TACTCCTGCT TGTAATATGC 
    CTCTGTTGTC ACTGAAGAAT GGGGGGAGGG TGGCTATTGT AAATCTTCAG 
    GCAACTCCGA AGGATAAAAA GGCAAGCCTT GTCATTCATG GACTTGTGGA 
    TAAGGTCATT GCTGGGGTTA TGTATATGAT GAATCTGCGT ATCCCTCCAT 
    ATATTCGTAC TGACTTTGTT CAAATTAGTC TCCGGAACTC GGTCAAAAAA 
    AAAATGCGTG AGATGGACTC TCCGAGTAAC AAGCATTCAT GGCTTGCGAG 
    CACCTTTGCC ATTTCTTCGA TCAGTTGAGG TTTCCTTTCC TGAAAGACCT 
    GACATGAAGC CTGTAGTACT AAAGGAGCAA CCATTTTCTT TGCAGAGAGA 
    AACATCAATG AATAGACCGT TTGTCATGCT ATTGACATTC AACTTTAGTG 
    ATGGTTGCGG CTGTTCGAGC TCTTCCATTG AATGGCCTGT TGATTTTCTG 
    AAGCAAAAAG ACAGCTTTGT CAGGGATAGA AGTCTAGTCC TGCAAGAGTT 
    GCAACATGCT GCAGAGCATC GATCACGTGC AGGGCAGCAT GCAATTCTGG 
    AGAGGGAGGG TGTGCCAAGA GCTGAAACGT CAATTCATGC ACTTGTGACC 
    AACATCGTCA GGTATGATAC TGAAGATAGC AAGGCGGCAG TTCCCATGGC 
    TACATGGATG AACAGCAACG GCAGCCTTTC GAAACGGCAT ATGGATGCCA 
    TTGGTTGCAA CCCAGCATCG TCAAAAAAGC AGAAGTTGGT TGCTACTCGT 
    CATCGGCGAA AGGGCTTGAA CCCTGCTACT CAGAAAGTTT GATGGCTGTT 
    TGTTCTAGTT GTCAGACTAG AGTTAGGATA GATGCATGAG ATGTTCACAG 
    TAGCTAGAGT AAGGTGTTAA CAACTTCTAG TGCATGTGAA AGCTGGTAGA 
    ATTTTAACTT GACAAGCCCA ACGTAATTCA GCAACCATCT CAAAAGAAAC 
    TGGTTGTGGG GCTTGATGGT ATGTTTTGTA AAGCTCGGGA AGATGAACAA 
    ACCTCTAAAT CATTAAGGAT GATCTGAGGA ACTGGAGGTA AAGTGAACCG 
    TACAAAGAAA ATAAATGGAA GGCGAGACAA TTTTTTATTG CTGC

    Gene models with high sequence identity

    1. AT5G55760.1 [+] show detail - sirtuin 1
      E-value: 3e-124; Score: 442.00

     

    InterPro Scan Digest

    Program Description E-value
    HAMAP NPD_MF_01121 25.972
    HMMPfam NAD-dependent histone deacetylase, silent information regulator Sir2 3e-05
    HMMPfam NAD-dependent histone deacetylase, silent information regulator Sir2 6.4e-23
    superfamily DHS-like NAD/FAD-binding domain 3.7e-73
    Gene3D no description 7e-42
    HMMPanther NAD-dependent histone deacetylase, silent information regulator Sir2 4.6e-75
    ProfileScan NAD-dependent histone deacetylase, silent information regulator Sir2 43.899

    See the detailed result >

    AT5G55760.1

    Model type
    Protein coding
    Short Description
    sirtuin 1
    Curator Summary
    Encodes SRT1, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).
    Computational Description
    sirtuin 1 (SRT1); FUNCTIONS IN: NAD binding, DNA binding, zinc ion binding, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: protein amino acid deacetylation, chromatin silencing, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: chromatin silencing complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent histone deacetylase, silent information regulator Sir2 (InterPro:IPR003000); BEST Arabidopsis thaliana protein match is: sirtuin 2 (TAIR:AT5G09230.7); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J033068G21 - Rice Full-length cDNAs - Original: J033068G21

    full reading [+] show sequence

    Nucleotide sequence: J033068G21 - full reading 
    GAATTTTCTC CCCTCGCGCC GCCGCCGCGT TCACCTCGGT CGTGCCGGCC 
    GCCTCCTTCT CGCTCCGCCG CCGCCGCGCT CGCTGCTCTC TCTCCCTCCC 
    ATCTCGCCCT TAGTCCGCCG CGTCCGCCTC CTTCTCTCTC CTCGCTGCTC 
    TCTCTCTCTC TCTCTCTCTC TCTCTCTCCC ATCTTGCCCT TGCTTGCTGC 
    TGGAGCTCGA AGCCCACGCC ATTTTCGCGG CCGCGGGGGA ACCCTAGCCC 
    TAGCCGCGCC AGTGCGTGCG TGCGAGCGAG CGCCGCCGAT CCGATCCGAT 
    CCGCTTCGCC GCCCTATGTG CCGAGGCCGT TCGAGGTAGG TGTCCCTCCA 
    ACTTCTACCT CAGCGCCCCT CTCCGTCGCA TCCAGGGACT CCGCCGCCGC 
    CGCCTCCGAT CCCAGCATCC TCGAATCCGA TGGTAAATGC AAGAAGCCAA 
    AGGGTAAGCA CAAGGTTGTA CTATTGGGCT TTTCGCGCAT CAAGAGATTT 
    CACTCTGTGG CATACCTTCA GCAAATATGG TGCTTTGAAG TGGTTGGAGA 
    GATCGATTTC AGCTTCCGTG TGTTAACCTA CAGCTTATAC TTCAGGATTC 
    ATCTCGGGAG GTTCTACAAG CGATTTGGAC GCCGAGCTTG CAGCACTGAG 
    CATGTCCATG GTTGGGACCA GAAGCCTGTT CGCTTCCAGC TCTCCACCTC 
    TGATGGGCAG CACTCATTAT CTCAGTGCTC CCTGGGTGAG CCCGGGAGCT 
    GGGTACTTTA CCATGCTGGC AATTTTGTGG TCTCAAAGCC TGACCAAACA 
    ATCAAGCTGA AGTTCTCGAT GGCTTAGATT GATTGCACAC ACACAAAAGG 
    TGGGTCTTTG TGTCGACTCG GCGTTCATAT ACCCAAAGGG CTTTCAGCAG 
    GAGAGGATGG TGAGGTCTCA GAAATGTAGA TGCTGACAAG GAACTTACAT 
    TAGATTGTAG ACAAATGCAG CTTGCAGCCT AATTCTATTT TTAATCTGGG 
    CTCATGTAGA CAAAGGTGTA TATAATTGTA GGCTTCAATT TTGTGTGATC 
    GGTAACATGG ATGTTCTCAT ATAATTAGTG TCTCCTTGAT TGTGC

    Gene models with high sequence identity

    1. AT1G12710.1 [+] show detail - phloem protein 2-A12
      E-value: 7e-41; Score: 164.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G12710.1

    Model type
    Protein coding
    Short Description
    phloem protein 2-A12
    Curator Summary
    This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber, suggesting that this protein could potentially have carbohydrate binding capabilities.
    Computational Description
    phloem protein 2-A12 (PP2-A12); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: phloem protein 2-A11 (TAIR:AT1G63090.1); Has 458 Blast hits to 452 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 456; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR