K00648

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00648

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00648

Determination of introduced cDNA(s)

J023147N17 - Rice Full-length cDNAs - Original: J023147N17

full reading [+] show sequence

GGTTCATCTA ACTGCACGTC ACGCCCTCCG CGTGTGCCTC CCCTTCGCCC 
GCTCGCTCCG TCGTTAAGCC AGATCGCCCG CCGCTCCGTG CCCTAGCGCC 
GCCGCCGCCG CCGCCGACAC CGGAATCGCC GGGCAGACTG CGAGCGCGGA 
GCCACCAGCG TGGGGCGGCG GGATGGGCGA GGAGGCCAAG TACCTCGAGA 
CGGCGCGGGC CGAGCGCTCC GTGTGGCTGA TGAAGTGCCC CCCGGTCGTC 
TCGCACGCCT GGCAGGGCGC CGTGTCCTCC TCCGACGCCG CCGGCTCCAA 
CCCTAACCCC GTCGTCGCCA AGGTCGTCCT CTCCCTTGAC CTCCTCCGCT 
CCGAGGAGCC CTCCCTCCAG TTCAAGATGG AGATGGCTCA AACTAACACT 
GGCAATACAC CAAAGAGTTA CTCCTTGAAT ATGTCCAAGG ATTTTGTACC 
AATGTGTGTT TTCTCTGAGT CTAACCAAGG GAAACTTTCA TGTGAAGGAA 
AAGTCGAGCA TAAATTTGAC ATGAAGCCTC ACAGTGATAA TTTGGTGAAC 
TATGGAAAGT TATGCCGTGA AAGGACACAA AAGTCCATGA TCAAAACTAG 
AAAAGTGCAG GTAATTGAGG ATCACAGAAT GAGCCTGATA CCGTTGCCTG 
GCATGGTTGG TCTCATACCT TCTGGTTCTA AGGAGAAGAA GAAGCAAACA 
CCAACCAAAC CATCTGATGC AAAAAGAATA CGTAGGGATC GCAGGGAACT 
GGAAAATATT ATATTCAAGC TTTTTGAAAG ACAGCCCAAT TGGGCACTAA 
AGGCGCTGGT GCAAGAAACT GACCAGCCAG AGCAATTCCT GAAGGAGATT 
CTGAATGATC TGTGTTTTTA CAACAAACGA GGACCAAACC AGGGAACGCA 
TGAGCTCAAG CCTGAGTACA AGAAATCTAC AGGGGACACT GATGCTTCTT 
GAATATGCTA GTTCATTTAA CTGCTTTCGG ATAACCAACA TACTCAACCT 
GTTGACTCTG AAGTCACGAA CATTGAGTTG TGCAGACATC TCATATTTCA 
GTAACATTCG TTCTGCTGCT AAATGCTAAG AGGCATAGGC GAATAGTTGT 
AAGGATAGTT TGATACATTT ATTAGAGAAA AGAATAGAAA AGAAAAATCT 
GGAATCTATG TTCAGGTAAA ATAATGTGCC TGGTGGGAGT CGCAGCGTAG 
AGCATAGTCC TATTCATAAT TTTCGTTGTT TATATGCTGT TTTTATGTCT 
CATTTCATCA TTTGAAATGC AGGATTTATC TGATTCTTCG

Gene models with high sequence identity

AT1G75510.1 [+] show detail - Transcription initiation factor IIF, beta subunit
E-value: 1e-79; Score: 294.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	Transcription initiation factor IIF, beta subunit	1.3e-55
Gene3D	Winged helix-turn-helix transcription repressor DNA-binding	6.8e-23
superfamily	"Winged helix" DNA-binding domain	1.1e-27
superfamily	Transcription Factor IIF, Rap30/Rap74, interaction	6.9e-21
HMMPIR	Transcription initiation factor IIF, beta subunit, subgroup	3e-152
HMMPfam	Transcription initiation factor IIF, beta subunit	1.2e-16
HMMPfam	Transcription initiation factor IIF, beta subunit	5.8e-44

See the detailed result >

AT1G75510.1

Model type: Protein coding
Short Description: Transcription initiation factor IIF, beta subunit
Computational Description: Transcription initiation factor IIF, beta subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, general RNA polymerase II transcription factor activity, catalytic activity, ATP binding, ATP-dependent helicase activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription from RNA polymerase II promoter; LOCATED IN: mitochondrion, transcription factor TFIIF complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription Factor IIF, Rap30/Rap74, interaction (InterPro:IPR011039), Transcription initiation factor IIF, beta subunit (InterPro:IPR003196), Transcription initiation factor IIF, beta subunit, subgroup (InterPro:IPR016640); BEST Arabidopsis thaliana protein match is: Transcription initiation factor IIF, beta subunit (TAIR:AT3G52270.1); Has 346 Blast hits to 346 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 128; Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Link: InterPro Scan - TAIR