K00839

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
T1	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00839

Determination of introduced cDNA(s)

J023088I08 - Rice Full-length cDNAs - Original: J023088I08

full reading [+] show sequence

GGATGGAAAA AAAAAAGAAC CATTTGCAAA TTGCAAAAAC GTCCTTTCTC 
CAGTTCTCCT CCCCTGAGCT TCTCCCAACA AGAACACCCA CTTGCTCTCT 
TCCCCTCTCT CTCTCGCCCC TCGAATTCTG GCGGCGAAGC GTACATGGAC 
AAAGCGGAGG AGGGCCAGTC TTCGGAGCCC GCCGATTCCG CGGCACCAGC 
CCAGGATGAC AGTGTGCAAA CTGCATCTGG GCATAATTCG CGAAGGCCAA 
ACCTTTCTTT GCAAATACCA GCTAGGACCC TGGATAACCA AATAGGCACT 
TCAGCGAGAA TTAATATATC CCCTAGCCCC AGCTCAACGA GAGCAGGATT 
GCCCCCGAGG CCTAATTCAA CTAGAACAAA ATCTTCTCTG AAGAGCATCA 
TTCCGCAACA GAGTTTCAGG GCGAGAAGTT CAGCACAGGA AGGTGATCGG 
GCGATCCTTC TGGTTCCTGG GACACCATCA GAAGGGCAGC AGGATAATAC 
ATCAACGTTG AGATCATTTT CTTTTAGAAA AGTCATAAAC TCATTATCCG 
CAAAACGTAC ACATTCTTTG CCAGTCACAC CTATAGCAAC TTCAGACAAA 
ACTTCTTCTC CGGCAAATCA GATCAACAAC CTACCAACCA CAGATGATCA 
AGATGTTCAA GCAAGAATTA GGCGCTCACT TTCAGTACCA GGAAATCGTA 
AAAACAGGAG TTTGAGGAGG GCGGATTCAT TAGGTGTCAT CCGTGTGATT 
CCAACAACTC CCCGACCTAT CCCAGTTAAT ACAACTGCAT CAAGTGATGG 
GATTGAGGAG ACAGTGGATG TTCCTGGAGA TGGAGGCAAA GATATCCCTG 
AAGAAGAGGC AGTCTGCAGA ATTTGTCTAG TTGAACTAAA TGAAGGAGGG 
GAAACACTTA AAATGGAGTG CAGCTGCAAA GGGGAACTTG CTCTTGCACA 
CCAAGACTGC GCTGTCAAAT GGTTTAGCAT CAAGGGAAAC AAGATATGTG 
ATGTTTGTAA GCAAGAAGTT CAAAATTTGC CTGTCACTTT GTTGAGAATA 
CCAACTCAAA CTGCTAATAG GCGAGTAACA AATGGTGCTC ATCAAAGAGC 
CTCTCAACAA TACAGATTTT GGCAGGACAT TCCAATTTTG GTCATGGTTA 
GCATGCTTGC ATACTTCTGC TTCTTGGAAC AACTTCTGGT TACAGATTTG 
CTGTCACACG CACTGGCAAT TTCGTTGCCT TTCTCATGCG TGTTGGGCCT 
CCTTTCTTCC ATGATAGCAT CCACCATGGT AACCAAGAGT TATCTATGGG 
CCTATGCTTC GTTCCAGTTT GCTATTGTGA TACTGTTTGC TCATATCTTC 
TACAATGTGT TAAAAGTAAA TCCAGTCCTT GCGGTCCTAC TATCCTCATT 
CACTGGGTTT GGGATTGCTA TCAGTGCGAA CTCAATGCTA GTGGAATACT 
TGAGGTGGAG ATCTAGGAGG AATCAACAGC TAGCTCAAAC TGTCGATGAT 
GGTCAGCGAC AAGAACCTGG AAGTAATGCT GTAAATGAAA ACAATGGTGA 
TAGACAGCAA GCGCAGCATC GAGAATCTGG AGATAACATT GTATGACAAT 
TCAGATTAAG AAGCGCAATG AATGTGAATA GCTAGCTTTG ATATGTTCAG 
TAGGTTTAGC TAGTCGAACT TCAGAATCAC CTATGCAAGA ATAGGAAACA 
TGGAGCAAAT TTCCAATGGC GACAGCATAA GATGATAAGA GGCTATGTGA 
CAAGTGAGAA CATGGAGAAT GCGGCGGATA TAGTTAGGCA ACACAGAGAG 
CTGAACCAAA CTATCCATTG TACACGGTAT TAATTTAGCA GTTTGACATC 
ATAAGGTGTG GTTTGTTCAG TGTAAGTTTA GTAGTTCTGG TCGTCTGGTA 
TTACAAAATT ACATCACGAA AGTGAGTGCA GCTAGTGGCT AGCCATACAG 
ATATATATAC AGGTATAGGT ATGTGAAATA CAGTTATACC AGCTTTTACA 
GTTCTGTAGT CTGTGTGAGG AGAAATGTGA AGGCAGAGAA TTTTAGATAA 
TGACATATTT CAGAGTTCTG AACTTAGAAA TTATTCGGGT AAAAAAATAG 
AGAAGAACTG TATGCAGTGC GTGGGGATTG AATTGAAATG AAATATGGAA 
ATGATGTTCG CTTC

Gene models with high sequence identity

AT5G60580.3 [+] show detail - RING/U-box superfamily protein
E-value: 3e-99; Score: 360.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	3.8e-12
HMMPanther	MEMBRANE ASSOCIATED RING FINGER	2.7e-06
HMMSmart	Zinc finger, RING-CH-type	5.8e-18
HMMPfam	Zinc finger, C3HC4 RING-type	1.9e-06
superfamily	RING/U-box	1.2e-06
ProfileScan	Zinc finger, RING-CH-type	19.348

See the detailed result >

AT5G60580.3

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G09760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR