K01105

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01105

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01105

Determination of introduced cDNA(s)

J033069K12 - Rice Full-length cDNAs - Original: J033069K12

full reading [+] show sequence

GTGAAGCCAC AACGGCCAAG CAGAAAGTGC AATTAGCCTG CAGGCAGCTA 
ATCAGTAGTA GCTTGCTAGC CATGGCTTCT GCAACTAATT CTTCACTTAG 
CTTAATGCTG CTGGTGGCTG CAGCTATGGC GTCAGTGGCA TCGGCGCAGC 
TCTCGGCGAC GTTCTATGAC ACGTCGTGCC CCAATGCGTT GTCCACCATC 
AAGAGCGTCA TAACAGCCGC CGTGAACAGC GAGGCTCGCA TGGGGGCGTC 
GCTGCTCAGG CTGCACTTCC ACGACTGCTT CGTCCAAGGG TGCGACGCGT 
CAGTTCTGCT GTCCGGGCAG GAGCAGAATG CTGGCCCGAA CGTGGGGTCG 
CTGAGGGGAT TCAGCGTCAT CGACAACGCC AAGGCGCGGG TGGAGGCCAT 
CTGCAACCAG ACCGTCTCCT GCGCCGACAT CCTCGCCGTC GCCGCCCGTG 
ACTCCGTCGT CGCGCTGGGA GGGCCATCAT GGACGGTTCT GTTGGGGAGA 
AGGGACTCCG CCACTGCAAG CGAGGCCTTG GCAAATACCG ACCTCCCTGC 
CCCTTCCTCT AGCCTCGCAG AACTTATCGG CAATTTCTCC AGAAAGGGAC 
TCGACGCAAC CGACATGGTT GCTCTCTCAG GAGCACACAC GATCGGGCAG 
GCGCAGTGCC AGAATTTCAG GGACAGGATC TACAACGAGA CCAACATCGA 
TTCCGCCTTC GCGACGCAAC GCCAGGCCAA CTGCCCACGG CCGACGGGCA 
GCGGCGACAG CAACCTGGCG CCGCTGGACA CGACGACGCC CAACGCCTTC 
GACAACGCCT ACTACAGCAA CCTGCTGTCC AACAAGGGGC TCCTGCACTC 
CGACCAGGTG CTCTTCAACG GCGGCAGCGC GGACAACACG GTCAGGAACT 
TCGCGTCCAA CGCGGCGGCG TTCAGCAGCG CCTTCACGAC GGCCATGGTG 
AAGATGGGGA ACATCTCGCC GCTGACCGGG ACGCAGGGGC AGATCAGGCT 
CAGCTGCTCC AAGGTGAACT CCTAATTAAG GAGTAGTATG ACGGGATGCG 
TTCGTTGCTG GAAGCAAATC TTGTCGACGA CGACATAAAC GGGCCACACC 
ACATATACCC ATATATGTAG TATAACCACA AGTATAGGTA CGGTGGTGTT 
GTACTAGTAC ACGTAAAGTA TATGGCAGCC AGCTCGCTCT AGCAATCCAT 
CAAGTGTATG GAGCAGAGCA GCCATGGCAT TAGCACCTAG TATACCAAAA 
TAAAAGCTCC TCATGCGAAG GCATGCATGG AGGATTAATG

Gene models with high sequence identity

AT5G05340.1 [+] show detail - Peroxidase superfamily protein
E-value: 7e-102; Score: 367.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Haem peroxidase	1e-110
ProfileScan	Haem peroxidase, plant/fungal/bacterial	74.411
PatternScan	Peroxidases heam-ligand binding site	0
PatternScan	Peroxidase, active site	0
FPrintScan	Plant peroxidase	1.3e-72
FPrintScan	Plant peroxidase	1.3e-72
FPrintScan	Plant peroxidase	1.3e-72
FPrintScan	Plant peroxidase	1.3e-72
FPrintScan	Plant peroxidase	1.3e-72
FPrintScan	Plant peroxidase	1.3e-72
FPrintScan	Plant peroxidase	1.3e-72
FPrintScan	Plant peroxidase	1.3e-72
FPrintScan	Plant peroxidase	1.3e-72
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.9e-36
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.9e-36
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.9e-36
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.9e-36
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.9e-36
Gene3D	no description	3.9e-57
HMMPfam	Haem peroxidase, plant/fungal/bacterial	2.7e-80

See the detailed result >

AT5G05340.1

Model type: Protein coding
Short Description: Peroxidase superfamily protein
Computational Description: Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G58400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR