K01314

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01314

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01314

Determination of introduced cDNA(s)

J033129M07 - Rice Full-length cDNAs - Original: J033129M07

full reading [+] show sequence

GATCTCTTCC CAAGCTTCAA CTTCAAGAAC CCACCCACTT CTCCTCCTCT 
TCTCCATCCG CTGCGGCAAG CGCGCAATTC AGTTGCTGCG AGCTCGCTCG 
CCGGCGACAA TGGCGGCGGC GGTGGCGGTG GTGGTTGGTT GCGTTCTTCT 
TGGTGGTGTG TGGGGGTTCC CGGAGGAGGA TTTGGTGGCG CGGCTGCCGG 
GGCAGCCCGT CGTCGGGTTC AGGCAGTTCG CCGGATACGT CGACGTCGAC 
GAGAAGGCCG GGAGGAGCCT CTTCTACTAC TTCGCCGAGG CGGCGGAGGG 
CGCCGCCGCC AAGCCGCTCA CCCTCTGGCT CAACGGAGGT CCTGGATGTT 
CTTCGGTTGG AGGTGGCGCG TTCACAGAGC TCGGCCCATT TTATCCGAGA 
GGAGATGGCA GAGGCCTGAG ATTGAACAAG AAGTCTTGGA ACAAAGTATC 
CAATCTTCTG TTTGTTGAAT CACCGGCTGG AGTTGGATGG TCCTACTCCA 
ACACTTCATC AGATTACAAT ACTGGCGATG CACAGACCGC TAATGACATG 
TACAAATTTC TGTTGGGATG GTACAAGAAG TTCCCTGAAT ACAGGTCAAG 
AGGGCTACTT CTTAGTGGAG AGAGCTATGC AGGGCATTAT ATACCGCAAC 
TCACCGATGT ACTTCTCACA CATAATGAGA AATCAAATGG GTTCAAATTC 
AACATCAAGG GAGTAGCTAT CGGGAATCCG CTTCTCAAGC TTGACAGAGA 
TGTCCCCGCA ACATATGAGT ATTTCTGGTC CCATGGCATG ATCTCTGACG 
AAATATTTCT ATCAATCAGC CACAGTTGTG ATTTTGAGGA CTATACCTTT 
AGCAACCCCC ACAATGAGAG CAAGTCATGC AATGATGCCA TTGCAGAGGC 
AAACAGTATA GTTGGGGATT ATGTGAACAA TTACGATGTT ATTCTTGATG 
TGTGCTACCC ATCAATTGTG ATGCAGGAGC TACGGCTGCG GAAATATGTG 
ACTAAAATGA GTGTAGGTGT GGATGTTTGT ATGACTTACG AAAGGTATTT 
CTATTTCAAC CTTCCAGAAG TGCAGCAAGC TCTTCATGCT AACAGAACAC 
ATTTGCCCTA TGGCTGGAGC ATGTGCAGCG ATGTGCTGAA CTACAGCAAT 
AAGGATGGCA ACATCAACAT CTTGCCATTA CTTCAGAGAA TTGTAGAGCA 
CAAAATACCA GTTTGGGTGT TCAGTGGAGA TCAAGACTCT GTGGTGCCCC 
TATTGGGCTC CCGAACTCTT GTACGAGAGC TAGCTCATGA CATGGGCTTG 
CATGTCACAG TCCCATACAG CAGCTGGTTC CGCAGAGGGC AGGTTGGAGG 
CTGGGTAACA GAGTATGGTA ATATTCTGAC CTTTGCGACG GTGCGAGGAG 
CATCTCACAT GGTGCCATTT GCGCAGCCAG ACCGAGCTCT CGGACTTTTT 
CAATCATTCG CACTTGGACG GAGACTCCAG AATACAACCC ACCCACCTAT 
TAACTAAGTG TACCTACGAA AGGAGCTGAA GATACAAACA AATAGTCTAG 
GATTTTCAGT TTTGCTACAG AAGATTAGTT CATAAGGGTG TATTAGATGG 
TCAAATACGA ATATTTTATC TATTAGAGAG AACAGGGAAA TAATACTAGA 
TTAAATTCTT TATTGTTCTC TATCTGGATT GTCAGATTGC ATTCCTGGAA 
GTCTGGAACA TTGAGCAATC TGTATAACTA TGTCATTTTA GGGGTTTTGG 
GGGC

Gene models with high sequence identity

AT5G42240.1 [+] show detail - serine carboxypeptidase-like 42
E-value: 0; Score: 679.00

InterPro Scan Digest

Program	Description	E-value
superfamily	alpha/beta-Hydrolases	2.4e-126
FPrintScan	Peptidase S10, serine carboxypeptidase	4.9e-24
FPrintScan	Peptidase S10, serine carboxypeptidase	4.9e-24
FPrintScan	Peptidase S10, serine carboxypeptidase	4.9e-24
FPrintScan	Peptidase S10, serine carboxypeptidase	4.9e-24
PatternScan	Peptidase S10, serine carboxypeptidase, active site	0
PatternScan	Peptidase S10, serine carboxypeptidase, active site	0
HMMPanther	SERINE CARBOXYPEPTIDASE II (CARBOXYPEPTIDASE	6.1e-243
HMMPanther	Peptidase S10, serine carboxypeptidase	6.1e-243
Gene3D	no description	4e-125
HMMPfam	Peptidase S10, serine carboxypeptidase	4.2e-127

See the detailed result >

AT5G42240.1

Model type: Protein coding
Short Description: serine carboxypeptidase-like 42
Computational Description: serine carboxypeptidase-like 42 (scpl42); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 41 (TAIR:AT5G42230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR