K01343

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01343

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01343

Determination of introduced cDNA(s)

  • J013095J03 - Rice Full-length cDNAs - Original: J013095J03

    full reading [+] show sequence

    Nucleotide sequence: J013095J03 - full reading 
    GTGAGTGATC GCCAGTGGGG AAGGCTACCA GCAGCAATCC AATCTAATCC 
    ACCTCCACTC CCCCGCCGCC GCCGCACCTG GACTGCCCGG ATCCGCCGCC 
    GCCGCCTCCT CTGGGGTTGA TTGATGGCCA CGCCGTTCCA CAGCCCGCCC 
    TGCCCAACAG CCGAGCTTCT CCTCCACCGT CTCTAGAAGC TTCACCCCCC 
    CCCCCCCCCC CACGTCGCCG CTTCCCAAAC CCTAGCGTAG CGCCTCGTCG 
    AGGGTGAGAA GGAGGGTGGG CATGGATAGG ATCGTCGGGG CTAAGTACAA 
    GCTGGGCCGC AAGATCGGGA GCGGCTCCTT CGGGGAGATC TACCTCGCCA 
    CGCACGTCGA CACGTACGAG ATAGTCGCCG TCAAGATTGA AAGCAGCAAA 
    ACAAATCATC CCCAGTTGCT TTATGAGGCC AAGCTGTATA ATGCTCTTCA 
    GGGAGGGACT GGAATTGCAA ACATAAAATG GTGTGGCATC GATGGTGAGG 
    ACAATGTGCT TGTTATTGAT TTGCTGGGGC CAAGCCTTGA GGATCTATTT 
    GTTTATTGTG GTCGAAGATT CTCGCTAAAG ACGGTCTTGA TGTTAGCGGA 
    TCAGATGATA ACAAGAGTAG AATTCATGCA TTCCAAGGGA TATTTGCACA 
    GAGATATCAA GCCTGATAAC TTCCTCATGG GCCTTGGTCG TAAAGCTAAC 
    CAGGTCTACA TTATTGACTT TGGGCTTGCA AAGAGGTACC GTGACGCAAC 
    TACTAATCGC CACATACCTT ATAGGGAAAA TAAAAACTTG ACCGGCACAG 
    CTCGATATGC AAGTTGCAAC ACTCATCTTG GCATTGAGCA AAGCCGAAGA 
    GATGATTTGG AATCCATTGG TTATGTTCTT CTGTATTTTC TCAGGGGAAG 
    TCTTCCTTGG CAGGGTTTAA AAGCTGCCAC AAAGAAGCAG AAATACGATA 
    AAATAAGTGA GAAAAAGCTC GCAACACCCA TCGAGGTTTT ATGTAAATCC 
    CATCCTGTTG AATTTGCTTC TTATTTTCAT TATTGCCATT CATTGACATT 
    CGATCAACGG CCGGATTATG GATTTTTGAG AAGGCTCTTT AGAGATTTGG 
    CTGACCGTGA AGGTTATCAG TATGATCATG TTTTTGATTG GACACTGTTG 
    AAGTGCAAAC AATCCCAAAA AGCAAAGGCT CAACAACAAG ATCCAGGTGT 
    AAGTAGCCGG GCGGTTCCAA CGAATATTGA GAAGCACCAA GTTAGTGTGT 
    CACGCCCAAC AGAAGCTTCT GGTCAGCTTG AATCAGAGCA ACGCCCAGCG 
    ATTAGAATGC AATTCAAATC TACTGCTGAA AACAGTCGTT CAAGTAATCG 
    GCATACTGAC AAATTGAGAG TTGGTACTAG CACTGAAAAT GTCTTGCTGC 
    AATCCACATC ATTTGGCCAT GCTGATGCTC CAAGGAGGAA TATAGCAATC 
    TCAAAAACTC AGGGCCTCGT TGATTCCAAT GCTCATGGAA CGAACAATCC 
    AGGGCCTTCT AATCACCTTT AGCATCTGTA TCAGTTCATG AGAGCATATT 
    GGTCCATGCA GACCACCATT GGTCACTGTA TATGTCTTCG GGAGAGAATC 
    CAGAGCAAAG CTGTATGCCC TCAAATGTTT TGGTGCATGA AGCCGTTGCC 
    AAAAATTGCT GTCAGGCTTT TAAGGTGTCC TCTGTATTGA TTGAGGTGAT 
    TACTACCTAA CAGAAACAGT GGTTAGGTGT GCTGTTAGCC TGTTACTGTT 
    CAGCATCTTT TAGCGTGCAG TGGTCAAGAA GTTCACTTTT CCATATTATG 
    TGGATAATAT ATGGAAGCTT AGGAATGTCA GTACCCTCTT TTGTGTTCTA 
    CATGTGTGAG TGCATTGTAA CGTTTTACCT GGGCTCATTT ATTCAGGGTT 
    CTTTGCC

    Gene models with high sequence identity

    1. AT4G28880.1 [+] show detail - casein kinase I-like 3
      E-value: 6e-148; Score: 521.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Serine/threonine-protein kinase domain 8.9e-16
    HMMSmart Tyrosine-protein kinase, catalytic domain 9.7e-05
    superfamily Protein kinase-like domain 8.3e-66
    Gene3D no description 2.4e-26
    Gene3D no description 1.2e-57
    HMMPfam Serine/threonine-protein kinase-like domain 3.2e-38
    HMMPfam Casein kinase 1 gamma C-terminal 3.9e-10
    HMMPanther CASEIN KINASE 4.3e-200
    HMMPanther CASEIN KINASE-RELATED 4.3e-200
    ProfileScan Protein kinase, catalytic domain 28.796
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0

    See the detailed result >

    AT4G28880.1

    Model type
    Protein coding
    Short Description
    casein kinase I-like 3
    Computational Description
    casein kinase I-like 3 (ckl3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I-like 4 (TAIR:AT4G28860.1); Has 64022 Blast hits to 63665 proteins in 2312 species: Archae - 48; Bacteria - 11126; Metazoa - 24220; Fungi - 7316; Plants - 9570; Viruses - 322; Other Eukaryotes - 11420 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR