K01451

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01451

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01451

Determination of introduced cDNA(s)

  • J033004D14 - Rice Full-length cDNAs - Original: J033004D14

    full reading [+] show sequence

    Nucleotide sequence: J033004D14 - full reading 
    GAGGGGGCTC GTCGACGGCG ATCAACCGCC GTCGCCGCGC CTTGGATCTT 
    AGGCCCTTGG TCGGGGATAG AGGCGAGGAT CGAGTCGTCT TCTTCCTCTC 
    TCTCTCTCTC TCAGCCAGCC CGCGCGATCA GAGATACACA TTGATCATCG 
    ATTCGTTCTC TTCCTCTCCT CTCAGCCGGT CTGTGAATTT CTTGGCCAGG 
    TGAGAGGTGA TCCAAGGTTT CTTTCCTCCT TTGACGCTCG CAAGGTGTTC 
    GACGGAATGT CTCCGGAGAG CAAGAAGGCG TTGGTGGAGG GGGGCGGCGA 
    CGACCGCATC AGCTTCCTCC CGACCGCGCT CCTGCAGCAC GTGCTGTCGT 
    TCCTGCAGGC GAAGGAGGTC GTGCGCACCT GCGTGCTCGC CCGGCGCTGG 
    CGCCACCTCT GGAAGTCCAT GCCCATCCTG CGCGTCACCG GCGCCGGCGA 
    CGCCCGGGCG TTCCACACGT TCACGTACCA TCTTCTTCTC CTCCGAGACC 
    GGTCGCCCCT GGAATCTTGC ACGTTCGACT TCAATGTATT CTCCAAAGAC 
    GACATGCCCA TCGTGAACCT CTGGATTCGG TATGTCTTGC TGTGCCAAGT 
    TCGGGTGCTC ACTCTCGCCA TCGGTGGACA TCAGCTGACT GATCTGCCTG 
    TAGTCTCCCC AATCTTGACA AGGTTGGAGC TTAGTCGTCT GAGTGTAAAT 
    GGCAAGTTTC TTGATTTCTC GAGCTGTCCG GCACTGAAAG AGCTGAAGAT 
    GACCAACTGC GAGATATCTG CTGACAAAAT ATCTTCCAAG TCCCTCAAGC 
    GTCTCAGGAT CTGTGAATGC AAGTTTAAGT CGAAGATGAG AACAAGAATC 
    TCTGTACCAA GTCTACTTTT CTTGAAACTA ATAGCTGTCA AGGGTAGAAC 
    TCCTTTCCTT GAAGACATGC CAGTGTTGGT AGCAGCAAAA GTTTTACTGC 
    TCGACTTCTA CTGTAAGGAT TGTTGTGATG GCAATGATCC TGGGTATTGT 
    CCTGCTGGCT GTACGCATTG TTATGGCATT GATGATGGTA GTGCAGGCTG 
    TGTGCTTCTA AAAGGTTTGG CGGATGCTAC GAATTTGGAG TTGATAGCTG 
    ATCCTGAAGT GTTTATTCTC AAAAGGGATT TGAGGTGGTG CCCTACATTC 
    ACTAACTTGA AGACTTTATT ACTCAGCCAG TGGTTTGAGT CTTCTGACCA 
    CTGTGCACTA ATTTGCATTC TTCAACACTC ACCGGTTCTA GAGAAGCTCA 
    CTCTTCAGCT TTCTAAGAAA TCAGTAATCA ATGTTCGATC AAGAGCGATC 
    TACAATTCGA TGGAAAAGTC ATTTACATCA GAAAACCTTA AGACAGTTGA 
    AGTTAAATGT CAAGATATTG ACCAGAGAGT TCACAAACTT ATGAAGTCCT 
    TGAACAGCTA TGGAATACCA CTTGAGAGAA TTAATATCCA ACAAACAAAT 
    CAATTTTCTG AGTGTTTTAA TTTCGTTTGG ACAGGATTCA TACCAAGACA 
    GAGTTGCGGA AGACCCGGGC TGTCGATGTA TCTAAATTCT CCTTAATTTG 
    CCATCTGGTA TTGCTGCTTC AAACCAATGG GGATATTCTT AAATCGGTTC 
    CAACTGAGGG AATGAAACAT AGGTTTATTG ATACGATTTG CTTGGATGTG 
    TCTGGACGTG GTTTTATTAG CTACCTACTA GGTATTAGTC TTACTCCATG 
    TTTCGTTAAC GGCCTGACTT GGTAGTATCT TTCGTGATGA CTGAAGCTGG 
    ATCAGCTACT GAACTGGAAC TGAATGTTCA TGCGATTTAT AAACTTGCGA 
    TGCCCTAGGA CAGTTTTATG CTTTCCTTTG TGTATTTTGT GGAGATTTGA 
    TCAAATTTCA GTTCATTTTG GACCGACGCA CAAGCTGGAT TACTATTGCG 
    GAATTTGGAA AAAAAAAAAG AACTACTTTG TAAAGCAGGT ATGATACCAA 
    GCAAGAATCA GGCAGGTATC GGATT

    Gene models with high sequence identity

    1. AT3G26922.1 [+] show detail - F-box/RNI-like superfamily protein
      E-value: 9e-12; Score: 69.30

     

    InterPro Scan Digest

    Program Description E-value
    superfamily F-box domain, Skp2-like 2.9e-10
    superfamily RNI-like 5e-09
    ProfileScan F-box domain, cyclin-like 9.127
    HMMPfam F-box domain, cyclin-like 5e-05
    Gene3D no description 1e-05

    See the detailed result >

    AT3G26922.1

    Model type
    Protein coding
    Short Description
    F-box/RNI-like superfamily protein
    Computational Description
    F-box/RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 2288 Blast hits to 2252 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 2284; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR