K01510

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01510

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01510

Determination of introduced cDNA(s)

  • J013048C24 - Rice Full-length cDNAs - Original: J013048C24

    full reading [+] show sequence

    Nucleotide sequence: J013048C24 - full reading 
    GACTTTCGGC ATCCGCTGCT GTTTTCTCTT CCGCTTTTTC CTCTCTCTCT 
    CGCCTCGCCT CTGCTTCCTC CTCCCGTTCG TCTCCCCTAC CTACCTAGGG 
    TTTCTCGCCG CCTCGCATCC CCTCCTCCTC CTCGGCTGGT TCGCCTCCTA 
    CTCTACGCTT GCTGCTGCAG GTACAAGCGA TAAGCAGTAG CTTCTTCATC 
    AAAGGTTTTG TGCAAAATTA TGCGATCTTC ATGGGCTGAT TCAGTTGCGA 
    ACGCCGAGGA ATCGGCGCCC GCGACTGGTG CTGCTCCCAC CCCTGTTGCT 
    AATCACCAGA ACTCACGCCC CACTCGCAGC GCATACGTGC CTCCTCACCT 
    CCGTGGCCAG GCACCAACCA CAACTGCAGC TCCAGCTCCA GCTCCAGGAC 
    CAGCTGCTGT CCAGCCCTCA GCTTCTGTAC AGCCTTCTGG TTACGCAGCT 
    ATTGTTGGTG GCTCTCGCTG GGCTGGCCCT GCCAGTGGTG ATGGTACTGG 
    CGCTGTAGGT GGCCCACGCC AGAGCGTTGG TGGTCGTGGT GGGGGTGGGG 
    GTGGGGGTGG GGGTTGGAAC TCCCGCCCTG GGTGGGACCG GAGAGACCGT 
    GAACCTAACC CTTTTGCCAA TAGCGAGGCA GAGGAAGCCA CAGAGGTTGA 
    TTTTGATACG GCAAACACTG GCATCAACTT TGATGCCTAT GAGGACATTC 
    CTGTGGAAAC AAGTGGCCAT GATGTGCCAC CGCCAGTCAA TACTTTCGCA 
    GAGATTGATT TGGGTGATGC GCTGAATGAG AACATACGGA GGTGCAAATA 
    TGTGAAACCT ACGCCAGTGC AGCGGTATGC CATTCCAATC TCCATTGCAG 
    GGCGGGATCT CATGGCTTGT GCTCAGACAG GGTCTGGAAA GACAGCCGCC 
    TTTTGTTTCC CTATCATTAG TGGGATTATG AGCTCTAGGC CACCACAGAG 
    GCCAAGGGGA TCGAGGACTG CATACCCTCT TGCATTGATT TTATCCCCCA 
    CTCGCGAATT ATCAGTCCAA ATTCATGAAG AAGCAAGGAA ATTCGCATAC 
    CAGACTGGTG TTAGGGTGGT TGTTGCGTAT GGTGGAGCAC CAATACATCA 
    ACAGTTGAGG GAATTGGGAA GGGGCGTTGA AATCCTTGTG GCAACTCCTG 
    GTCGGTTGAT GGATCTGCTG GAGAGGGCTA GAGTATCACT GCAAATGGTG 
    AAGTACTTAG CTCTTGATGA AGCTGATCGA ATGCTTGACA TGGGGTTCGA 
    GCCGCAAATT CGTAAAATTG TTGAGCAGAT GGACATGCCC CCTCGCGGTG 
    TGGGGCAGAC AATGTTGTTT AGTGCTACTT TTCCAAAAGA AATACAGCGC 
    ATGGCTTCAG ATTTCCTTGC GGACTACATC TTCCTTGCTG TAGGAAGAGT 
    TGGTTCAAGT ACTGACTTGA TTGCTCAAAG GGTAGAGTTT GTCCTTGAAG 
    CGGATAAAAG AAGTTACCTC ATGGATCTCC TCCATGCCCA AAAAGCGAAT 
    GGTACTCATG GGAAGCAAGC GCTTACTCTG GTCTTTGTGG AGACAAAGAG 
    GGGAGCTGAT GCTTTGGAGA ACTGGCTTTA CACAAACGGG TTCCCTGCAA 
    CAAGTATTCA TGGCGACCGA ACACAACAGG AAAGAGAGTA CGCGCTTAGA 
    TCATTCAAGA GTGGAGCAAC ACCCATCCTT GTTGCGACTG ATGTAGCTGC 
    CCGTGGACTT GACATACCTC ATGTTGCCCA TGTCATCAAT TTTGACCTCC 
    CAAATGACAT AGATGACTAT GTTCATCGTA TCGGACGAAC AGGACGAGCA 
    GGGAAGTCTG GCTTGGCAAC TGCATTTTTC AACGAGGGCA ATCTATCCCT 
    GGCGAGGCCG TTATGTGAGC TAATGCAGGA AGCAAACCAG GAGGTTCCTC 
    AATGGCTTGA ACGATACTCG GCCCGTTCTT CGTTCGGAGG TGGTGGTGGC 
    AGAAACCGCC GATCAGGCGG TGCCCGTTTT GGTGGCCGTG ACTTCCGCCG 
    CGACAATAGG GGTGGAGGCG GCGGCGGTTA TGGTGGTGGC GGTGGTGGCT 
    ATGGAGGCGG CGGTTATGGA GGGGGCGGTG GATATGGCGG TGGCTATGGT 
    GGTGGTCAAG GCTCAACTAG TTCGTGGGAC TGATACTGAT TCCCGGCTGT 
    CGCGAGCAAC GATCATATTC TATTGATTTC CCTGAAAACA TCTGATGTGT 
    TGGGATTTGT AATCAGCCTG GTTGGCATGG TGCTGGAAAA TGCGCCCGTT 
    TACCTTCAAT TTATGGATGG TTGTTACTGC ACTGGCTTTC TCGTTTACTG 
    GCAATAGTCT TGGTTGGCTG ATTCACCTGT CCTTTTCAGT TGATTGTTTC 
    GCGTAGTTTA CTAGTTTCGG ACGAGGCATT ACTGGCCAGA TGTTTTTTTT 
    CTTTTGTTTA TTAATGTTCT TTCATTTTTG ACCGGAATAC TTCTATACTA 
    GTTTTGGC

    Gene models with high sequence identity

    1. AT2G42520.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 0; Score: 738.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart DEAD-like helicase, N-terminal 3.4e-59
    HMMSmart DNA/RNA helicase, C-terminal 1.2e-34
    HMMPanther DEAD-BOX PROTEIN 3 0
    HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 0
    superfamily P-loop containing nucleoside triphosphate hyd 8.5e-58
    superfamily P-loop containing nucleoside triphosphate hyd 1.8e-47
    ProfileScan Helicase, superfamily 1/2, ATP-binding domain 28.158
    ProfileScan DNA/RNA helicase, C-terminal 23.162
    ProfileScan RNA helicase, DEAD-box type, Q motif 10.249
    HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 8.7e-49
    HMMPfam DNA/RNA helicase, C-terminal 2.7e-27
    Gene3D no description 3.6e-69
    Gene3D no description 8.7e-45

    See the detailed result >

    AT2G42520.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT3G58510.3); Has 140248 Blast hits to 67514 proteins in 3679 species: Archae - 1004; Bacteria - 58923; Metazoa - 37605; Fungi - 9665; Plants - 13202; Viruses - 1099; Other Eukaryotes - 18750 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR