K01526

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01526

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01526

Determination of introduced cDNA(s)

  • J023001C01 - Rice Full-length cDNAs - Original: J023001C01

    full reading [+] show sequence

    Nucleotide sequence: J023001C01 - full reading 
    GGCCTCAACC ACTACAACAC AAAAAGCGAG AGAGATCTCT CCCGAGCTCG 
    ATCCGGTCCA CCGCGACACG AAGACGACCA TGGCGATGGC TCGCTCCCAG 
    CTTGCCGCCG TGTTCCTCGC CGTCCTCGTC TCGGTGGCGC CGCTCGCCGG 
    CGCGGCGGAC AACCTCCAGG ACGCGTGCAA CCGGACGCTG TTCCCCAAGG 
    TGTGCATCCA GGCGCTGACG ACGAACCCGG AGAGCCGGAC GGCGAACGCG 
    CGGCGGCTGG CGGAGCTGTC GGTGTACGTG GCGGCGGAGG TGGGCACGGC 
    GGTGGCGGCG TTCGCGCACC ACGAGCTGAA CGGCGTGAAG GAGGACGCCC 
    TGTTCAAGTG CGTGGACAGC TGCTCCGACG ACATCGAGGA GGCGGTGGCG 
    CACCTCAGCG CGCTCACCCG CGAGCTCACC GACGCCAAGT TCCTCGAGGT 
    CAAGGCCTGG CTCTCCGCCA CGCTCGGCGG CTCCTCCACC TGCGAGGACA 
    CCTGCAAGGA CGCCCCCATC AGCGAGATCA AGAACGCCGT CGTCACCAAG 
    AGCCTCGAGT TCGAGAAGCT CCTCCGCGTC ACGCTCGACC TCATCACCGA 
    GGCCTCCGGC TCCATGTCCG CCGACGTCGC CCTCCCGCCC GCCACCGGCG 
    GCGGCGGCGG CGGCTATGGC TATGAATCCA GCAGCGCCGC CGCCGCGCCG 
    GCGCCTTCCG AGTCCGACTC CGACGTCGGC TCCGGCTCAG GCTCCGCCGC 
    CAGCGCGCCG GGCCCGAGCC CATCCGACGA CACCGGCTAC GGCGGCTCCT 
    CCGGCAGCCC ATCCAGCAGC CCATCCAGCA GCCCCTCCAG CAGCCCCTCC 
    GGCAGCCCCT CCAGCAGCCC CTCCGGCAGC CCCTCCGGCA GCCCCGCCGG 
    CAGCCCCGCC GGCGGCCCCA CCGCCGGCGG CCCTGCATCT GGACCGTCGT 
    CGTACGGCGC CGCCTCTGGC CCCGCCGAAG GGCCGTCGTC GTCCGGCGCC 
    GCCTCTGGCC CCGCCGAAGG GCCGTCGCCG TCCGGCGCCG CCGGCCCCGC 
    CGAAGGGCCC TCGTCGTACG GCTCCACCGA AGGGCCGTCT CCATCGCCGT 
    CGTCGTCCGG CTCCGCCGAC GCGCCGGGAC CCGGCGCCAG CGCACCGGAT 
    TCCGAGGAGT ACTGAGCGAC GTACGGCGCA TGCATGGCTA CACAGATTTT 
    TCCTTCTTCA TATCACCATT TCTTTTTCTC CAGTCTTCTT TGAACTAATC 
    CGTTGACACT AGCGAAGATT ATGATGGGTT GATCATTAAG CCTACGTAGA 
    AAATCCATTG ACATAATTAT TACAATGGTG TATGGGGAAA AGGGGAAAAA 
    TATTAGTATG GTTTATGAGG ATTATTTCGG ATCAAGAAAT GAGGCCCATA 
    TAGGAGAGAT GGCATGTGGC CCCAAATGGG AGATTTTTAT TTTATTTTAT 
    TTTTTTGGGA AAAGGAGATT TTTTTTATTA TTATTGTAAT ATTGTTATAT 
    GTTGTATTGG TTTTCTTTGA TGAAATTATA TCTGTTCTAA GTGCT

    Gene models with high sequence identity

    1. AT1G53840.1 [+] show detail - pectin methylesterase 1
      E-value: 4e-06; Score: 50.10

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Pectinesterase inhibitor 1.4e-26
    HMMPfam Pectinesterase inhibitor 8.3e-21
    FPrintScan PRICHEXTENSN 7.3e-10
    FPrintScan PRICHEXTENSN 7.3e-10
    FPrintScan PRICHEXTENSN 7.3e-10
    FPrintScan PRICHEXTENSN 7.3e-10
    FPrintScan PRICHEXTENSN 7.3e-10
    Gene3D Pectinesterase inhibitor 2.3e-25
    HMMSmart Pectinesterase inhibitor 2.2e-17
    HMMTigr Pectinesterase inhibitor 3.5e-18

    See the detailed result >

    AT1G53840.1

    Model type
    Protein coding
    Short Description
    pectin methylesterase 1
    Curator Summary
    encodes a pectin methylesterase
    Computational Description
    pectin methylesterase 1 (PME1); FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: extracellular region, plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT3G14300.1); Has 3031 Blast hits to 2961 proteins in 324 species: Archae - 8; Bacteria - 582; Metazoa - 1; Fungi - 194; Plants - 2221; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR