K01618

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01618

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01618

Determination of introduced cDNA(s)

  • J033050D05 - Rice Full-length cDNAs - Original: J033050D05

    full reading [+] show sequence

    Nucleotide sequence: J033050D05 - full reading 
    GGCGTCTTCC GCTTCCGACC GCGACCCACT CCCACCATTA CCGTCGGATT 
    CGGAGATTGC TCCGCCACTC CGGCGCCCCA CACATCGCCG GCGAAAATGC 
    TAATATCTCC TATGCTCGCC GCGCCGCCCC CTCCTGCAGC CGCTGCAAGC 
    CCGCGCTGCC GCGGCTTCCT CCCGGCAGCT GCGGCGACGG GGAGTCGACG 
    CCACCGGGGA GGGTGCCGCT TGCTTCGCCG CTCCGCACCT CCCAGGGTCG 
    GCGCCGTCAC GAGCACCGTA CGAACGCGGC GTGAAGAGGG CCGCCTCGAC 
    CGTGACGAGC TCCGGAGGCT GTGCCAGGAG CCTAACCCGG AGGCAGCCGT 
    TAACCTGCTC GACGAAATGC TCGTGCGAGG CGGCGCTGGC GCATTGGCCG 
    ACCTCGCGCC GGAGGAGCAA GCCGCGGTTC TCCAGGCCTG CGGAGAGGCG 
    CGGTCGCTGG CGTCGCTCAG GCGAGCGCAC CGATTGCTGT CCAAGTCCCT 
    GCCCGGGATC GCCACGCCCA TCCTGCACAT GATCTCCACG CTGTACTGCA 
    AGCTCGGCGC CCGCGGCGAC GCGCGGCGAG CACTCGAGGG AGCGTCGAGG 
    CCGCGGGGGA AGGATCATGA GCAGGAGCAG GAGCACGGCG ACGAGGCGAA 
    GAGGCGGGAG GCGTACGAGA AGGTGCGGGA GCTGCACGAG GAGATACGCG 
    CGGCGGGGTA CGTGCCGGAC ACCCGCTACG TGCTGCACGA CATCGACGAG 
    GACGCCAAGG CCCGCGCGCT CATGTACCAC AGCGAGCGCC TCGCCATCGC 
    GTTCGGGCTG GTCAGCACGC CACCGGGCAC CCCGCTCCGC GTCATCAAGA 
    ACCTCCGCAT CTGCGGTGAC TGCCACAATG CCGTCAAGCT CATCGCCAAG 
    GTCACCGGCC GCGAGATTGT CGTCAGGGAC AACAAGCGCT TCCACCATTT 
    CAAGGACGGC GCCTGCTCCT GCGGCGATTA CTGGTGAGGT GAGCCATCTC 
    TCCACCACTA CTGTCATTGA CACCCATTGT TATAGTTGAA TTCCTTCACT 
    ACGGTTGTAC ATTGTTACTG CTACTGGATC ATGTCAGTGA TGAAGAAATG 
    ATGATTCACT TTGCTTAGCC

    Gene models with high sequence identity

    1. AT1G47580.1 [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
      E-value: 5e-46; Score: 182.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SELENIUM-BINDING PROTEIN 4.5e-53
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4.5e-53

    See the detailed result >

    AT1G47580.1

    Model type
    Protein coding
    Short Description
    Pentatricopeptide repeat (PPR) superfamily protein
    Computational Description
    Pentatricopeptide repeat (PPR) superfamily protein; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G15690.1); Has 7703 Blast hits to 7698 proteins in 1705 species: Archae - 17; Bacteria - 3148; Metazoa - 102; Fungi - 130; Plants - 2368; Viruses - 0; Other Eukaryotes - 1938 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR