K01635

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01635

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01635

Determination of introduced cDNA(s)

  • J023009C02 - Rice Full-length cDNAs - Original: J023009C02

    full reading [+] show sequence

    Nucleotide sequence: J023009C02 - full reading 
    GAGAGGAGCC CCGCCTACCG CCGCCCTCAC GCCTCCTCCC ACCTACCTCA 
    CCTCGAAGCT GACGTCAGCA ATGGCGCTCG CCACCAACTC CGCCGCTGTT 
    TCCGGTGGCG CTGCGGCCGC GGCGTCGTCG GCGCCCCAGC CGCGGCTCGC 
    CGCCACGTTC CTCCCGATGA GGAGGCGAAC CGTCTCGGCG GTCCACGCGG 
    CCGACCCGGC GAAGAGCAAC GGGCCCGTGC AGGCCGCGGC GAAGGCCTCG 
    TCCCCGTCGA CGGTGGCGGC GCCGGAGAAG AAGCCGGTGG GGTTGGGGAA 
    GTGGACGGTG GATAGCTGGA AGGCGAAGAA GGCGCTGCAG CTGCCCGAGT 
    ACCGGAGCCA GGAGGAGCTC GACTCCGTGC TCAAGACGAT CGAGACGTTC 
    CCGCCCGTGG TGTTCGCCGG GGAGGCGCGC CACCTCGAGG AGCGCCTCGC 
    CGACGCCGCC ATGGGCCGCG CCTTCGTCCT CCAGGGCGGC GACTGCGCCG 
    AGAGCTTCAA GGAGTTCAAC GCCAACAACA TCCGTGACAC CTTCCGCATC 
    CTGCTCCAGA TGGGCGCCGT CCTCATGTTC GGCGGCCAGA TGCCCGTCGT 
    CAAGGTCGGG AGGATGGCTG GCCAGTTCGC CAAGCCGAGG TCTGATTCGT 
    TCGAGGAGAG GGACGGGGTT AAGCTGCCGA GTTACAGGGG AGACAACATC 
    AATGGCGACA CCTTCGACGA GAAGAGCCGC GTGCCGGACC CGCAGCGGAT 
    GATCCGCGCG TACGCGCAGT CGGTGGCAAC GCTCAACCTG CTCCGCGCCT 
    TCGCCACGGG AGGGTACGCC GCCATGCAGC GCGTCACGCA GTGGAACCTC 
    GATTTCATGG ATCACAGCGA ACAAGGAGAC AGGTACCGTG AATTGGCACA 
    CCGGGTGGAT GAGGCACTTG GCTTCATGAC TGCAGCAGGG CTAACAGTCG 
    ACCATCCGAT AATGACAACA ACTGACTTCT GGACATCCCA TGAGTGCCTC 
    CTCTTACCAT ATGAGCAGTC TCTTACACGT GAGGATTCCA CCAGTGGCCT 
    CTTCTATGAC TGCTCAGCCC ACATGCTATG GGTTGGTGAG CGCACTCGCC 
    AGCTCGATGG AGCTCATGTT GAATTTCTCC GTGGTGTTGC CAACCCTCTT 
    GGCATAAAGG TGAGTGACAA AATGAACCCC CGTGACTTGG TGAAGCTCAT 
    TGAGATTTTG AACCCATCAA ACAAGCCTGG AAGGATAACC ATAATTACAA 
    GAATGGGGGC AGAGAACATG AGGGTGAAAT TGCCTCATCT TATCCGTGCT 
    GTCCGCAACT CTGGACAGAT TGTCACATGG ATTACTGATC CCATGCATGG 
    AAACACCATC AAGGCTCCAT GTGGTCTGAA GACTCGTCCA TTCGATTCCA 
    TTCTGGCTGA AGTACGTGCG TTCTTCGATG TCCATGATCA AGAAGGTAGC 
    CACCCAGGAG GTATCCACCT GGAAATGACT GGGCAGAACG TGACTGAATG 
    CATCGGTGGA TCAAGGACCG TCACCTTCGA TGACCTGAGC GACCGCTACC 
    ACACCCACTG TGACCCAAGG CTGAACGCGT CGCAATCCCT GGAGCTCGCC 
    TTCATCATCG CGGCCGCCAC TCGCCGCAGC GTGTCGACCA GACAAGGCAG 
    CGCCTCCGAA ACCCTAGCTC CCCGCCTTCC CCTCCGCGGC CGCCAAAATG 
    GTGAACGTTC CCAAGACCAA GAAGACCTAC TGCAAGAACA AGGAGTGCAG 
    GAAGCACACC CTTCACAAGG TCACTCAGTA CAAGAAGGGT AAGGACAGCC 
    TGTCTGCCCA GGGAAAGCGC CGTTATGACC GTAAGCAGTC AGGATATGGT 
    GGTCAGACCA AGCCTGTTTT CCACAAGAAG GCAAAAACCA CCAAGAAGAT 
    TGTGCTGAAG CTGCAATGCC AAAGCTGCAA GCATTACTCC CAGCACCCCA 
    TCAAGAGGTG CAAGCATTTC GAGATTGGTG GAGACAAGAA GGGCAAGGGA 
    ACATCTCTTT TCTAAACTAC CTACTGGATA CTGAAGTTGT GGGTCTATTG 
    TGCTTCATAC TTCAATGTTA TTAGGAACTT AATTTAAGCA GACCATATCA 
    TGTATTCAAG TATCATCGTC TGACATTTAC TCTAGCAAGG ATTGGCTTTC 
    TGCTGAATCA AGTTTTCTTG CTT

    Gene models with high sequence identity

    1. AT1G22410.1 [+] show detail - Class-II DAHP synthetase family protein
      E-value: 0; Score: 812.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr DAHP synthetase, class II 0
    BlastProDom Ribosomal protein L44e 2e-38
    Gene3D Ribosomal protein L44e 5.5e-30
    HMMPanther DAHP synthetase, class II 1.7e-297
    HMMPanther Ribosomal protein L44e 8.3e-65
    HMMPfam DAHP synthetase, class II 9.2e-200
    HMMPfam Ribosomal protein L44e 1.8e-34
    superfamily Ribosomal protein, zinc-binding domain 7.3e-37
    PatternScan Ribosomal protein L44e 0

    See the detailed result >

    AT1G22410.1

    Model type
    Protein coding
    Short Description
    Class-II DAHP synthetase family protein
    Computational Description
    Class-II DAHP synthetase family protein; FUNCTIONS IN: 3-deoxy-7-phosphoheptulonate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase, class II (InterPro:IPR002480); BEST Arabidopsis thaliana protein match is: 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (TAIR:AT4G39980.1); Has 3811 Blast hits to 3796 proteins in 685 species: Archae - 0; Bacteria - 1237; Metazoa - 0; Fungi - 110; Plants - 171; Viruses - 0; Other Eukaryotes - 2293 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR