K01647

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01647

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01647

Determination of introduced cDNA(s)

  • J013064K08 - Rice Full-length cDNAs - Original: J013064K08

    full reading [+] show sequence

    Nucleotide sequence: J013064K08 - full reading 
    GAGCTTTCAC CCACGGGCGG GACATTTTTT CTAAGGAAAA GAGAGGAAAA 
    GGCAACCCCT TTCCTCGCGC GCGACCGCTG GCTGGCGGCG GAGCCGACCT 
    CACCTCGCCG GAGTTTAATC CCCCCTCCAT TCTTCCTCGT CCTGATTGCC 
    AACGACGGCG GAGAGCTCGC CGGTGCCCGA CGTACCGACG GCTCGATCAG 
    TCCTTCCCAT CCTCTGTTAG CCTCGCGTGA CGCCCGCCTG CGGTGGGGGG 
    AAGAACCTCG CCGTCGCACG CGATGGCGGG GACGCCACCC GATGGCGGAG 
    GAGATAGGCC GTGGGAGTCG TACCACACCG CCTACACCAA CGCCAAAGCT 
    GGAATGGAGG GAGTTGACAA AGAGAAGGTG CAGAAGAAGG TCGCCGAACA 
    TAAAATTTTG GAGCTGGAAG CTTCACGGGA TCTTTCAAAG ATATGGCTTC 
    ACACCGACAT GGATGCCTTT TATGCTACTG TCGAGATATT GGAAAATCCA 
    TCCTTGAAGG GAAAACCATT GGCAGTGGGT AGCATGTCTA TGATAGCTAC 
    TGCCAGTTAT GAGGCACGGA AGTTTGGAGT TCGTGCAGCA ATGCCTGGTT 
    TTATTGGCTG TAAATTATGT CCTGAGTTGG TTTTTGTCCG TCCAAATTTT 
    GAGAGATACA CTTATTATAG TGAATTGACA AGAAAAGTTT TCCAAAGGTA 
    CGATCCCAAC TTTGTTGCAA CAAGCCTAGA TGAAGCATAT CTCAATATTA 
    CAAAAGTCTG CTTCGATAGA GGCATTACTG GTGAGGAGGT TGCTACAGAA 
    CTTAGGGGTG CCATTCACCA GGAAACCGGT CTAACTTGTA GTGCTGGGGT 
    AGCTCCAAAC CGCATGATTG CTAAGGTTTG CTCTGATATC AACAAGCCTA 
    ATGGACAGTT CATTTTGCCG AATGACCAAG AAGCTGTGAC AACATTTGTA 
    TCAACACTAC CTATAAGAAA GATAGGTGGT ATAGGCAAAG TAACAGAACA 
    AATGTTACGT CAGGTTCTTG GTATCAGTAC ATGCCAGGAG ATGCTGCAAA 
    AGGCTTCTTT CTTATGTGCT CTTTTTTCTG AATCCTCAGC TGATTTCTTT 
    ATTTCGGTTG GTCTTGGACT AGGCGGTACT GAAACTCCTG AGCAAAGACT 
    AAGGAAAAGT ATAAGTTGCG AGCGAACTTT CAGGGCAACA GATGATTGTT 
    CTATGCTTTT CGAGAAATTA GATAGTCTCG CAGACAATTT GGCCGATGAT 
    ATGCAAAAAG AATGCCTGAA GGGAAGGACA CTAACACTCA AACTAAAGAC 
    TGCCGCTTTT GAGGTCAGGA CAAGAGCAGT AACCACACAA AACTATATCA 
    ACTCCAAGGA AGACATCCTG ATCTACGCTA GGAAATTGCT TAAGGCTGAA 
    CTGCCTCTTT CTTTGAGATT GATGGGGTTG CGGATGTCCC AACTTCGCGA 
    TGAGAAGGAT GATTCATCTA CCCAAACCCA AAAGACACTA GATAGATTTT 
    TCCGCACGCC TGACAACTCA AATGTCATTG GAGCAAACAG TCCAAGCATC 
    GGTAATACCA CAGGAGGGGA TAACTATTGC ACTAATGTGA TGACCAAGGT 
    CGATTATTTA GAGCATGATT CCATGGATGA TCAGGCATTG TTTTTGCATG 
    AAAAGAACTT ATTTGTTCCA GAAGTAAGGA GCTCAGACAA TTATAATAAT 
    GATGCTGCAT CAAGCAATCC ACTTATGTGT GATGGTGTTG GTGGAAAAGA 
    ATTGGATGAT GACTCCTCCA GTTCGAAGGG TACACATACT GTAAAGTTTG 
    ATGGCCAGCT CACCAGCTCT AACGCAACTA CTTCATCGAG TAAACCTGAT 
    CAGCTTTTCT GGATAAATGG CTACATTTGT TCCATTTGTG GATTTGAACT 
    ACCTCCAGGT TTTGAGGAGG AGAGACAAGA ACATTCAGAT TTCCACTTGG 
    CTGAAATGCT TCAGCAGGAA GAGGCAGTGG ACAGCACAGG CCCCCTCTCG 
    AAAGAGAGGT TAGCTGAAAG GCCATGCTCT AGCACACCCA CACCAAAGAA 
    GAAGCTCAAG TCTTCAAAAG AAGGAAAACA CATACCTATT GATGCTTTCT 
    TTCACAAGGT TAACAAGAAC TTGTAACATA CTGTAGCTAC CTATTCAGGC 
    ACTCTTTTTA ATCCTACAGA GCGATTTGCC CACTTGAAAA ACTGCTGTAC 
    ATGTAACTTC ATTCCATGTT CTTTTCAGAC TAGCATGTAA ATTGTAAATA 
    TATAACTCAA GAATCCTGTT AAATTAATTT CATAATTTAT TCAAATGTCA 
    TACGATTCTG C

    Gene models with high sequence identity

    1. AT1G49980.1 [+] show detail - DNA/RNA polymerases superfamily protein
      E-value: 2e-163; Score: 573.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan DNA-repair protein, UmuC-like, N-terminal 52.432
    HAMAP DPO4_MF_01113 27.988
    HMMPanther DNA POLYMERASE IV / KAPPA 3.4e-145
    HMMPanther DNA-repair protein, UmuC-like 3.4e-145
    superfamily DNA/RNA polymerases 5.4e-93
    superfamily DNA polymerase, Y-family, little finger domain 1.3e-14
    Gene3D no description 3.3e-27
    HMMPfam DNA-repair protein, UmuC-like 1.3e-42
    HMMPfam IMS_C 3.6e-09

    See the detailed result >

    AT1G49980.1

    Model type
    Protein coding
    Short Description
    DNA/RNA polymerases superfamily protein
    Computational Description
    DNA/RNA polymerases superfamily protein; FUNCTIONS IN: damaged DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA repair; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, Y-family, little finger domain (InterPro:IPR017961), DNA-repair protein, UmuC-like (InterPro:IPR001126), DNA-repair protein, UmuC-like, N-terminal (InterPro:IPR017963); BEST Arabidopsis thaliana protein match is: DNA-directed DNA polymerases (TAIR:AT5G44750.1); Has 10430 Blast hits to 10220 proteins in 2419 species: Archae - 210; Bacteria - 6752; Metazoa - 626; Fungi - 433; Plants - 141; Viruses - 0; Other Eukaryotes - 2268 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR