K01725

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01725

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01725

Determination of introduced cDNA(s)

  • J023076O17 - Rice Full-length cDNAs - Original: J023076O17

    full reading [+] show sequence

    Nucleotide sequence: J023076O17 - full reading 
    GAGAGGCCAA TTCCAAATCC GCCATCGCAT CCTTCTCTCC ATCCACCGAG 
    GCGGCGCCAC CACCTCTCGT CCGGCGGCGG CGCGGCGCGA CGCTCCATCC 
    CCGGCGAAAA GGCCGCCGGA TTCCCTGTGG GGGCGGCGGA GAGGCGTCGG 
    AGGAGGCTGG CGCCGGCGCG GCGACAAGCT TAATTAAGCA AATTGGATTC 
    GGATCACAAA GGAGGCGGTG CCTGTAGAAA AGCCATGGCT TCTTCGGTGT 
    TCAAGGCGAT GGCAGAGAAG GCAGGGCCGT CTGTCCGAAA GCAGGCCCTT 
    ACGCTGACCG ATGCAGCGGC GTCGAGGGTG CGCCAGCTGC TTGGCGTACG 
    GCAGCGTGCT TATCTCCGTC TTGGCGTCAA GGCCCGTGGT TGCAATGGGT 
    TGTCGTACAC AATGAATTAT GCTGATGAGA AGGGAAAATT CGATGAACTT 
    GTGGAAGATA AAGGAGTTAA GATACTAATT GATCCGAAAG CTCTTATGCA 
    CGTGATTGGA ACCAAAATGG ATTTCATTGA TGATCCACTT AGGTCTGAGT 
    TTGTGTTTAT GAACCCTAAT TCCAAGGGAG AATGTGGTTG CGGCGAATCA 
    TTTATGACAT CAACCAAAAA CAAAGGCCCG GCATAGTCCA CCAAGTTTTG 
    GCAGCGATTT GTTGATTATT TGATGTATAG AAGTATGTTG CTAATTTGCT 
    ATACACTTCA GTGACCCATT GTAGAGGAAA ATTTCATTTC AGCTCCATTG 
    AGCTGATTAT CCTTCGTCAC TCAGCATGGT TGGCACTTGT TACCTTTCAC 
    CTCTGGATTG GATCATCTGC AGCAAAGGAG GATACTGCCA TTCCCCTCTA 
    GCACGAAACA TCCAATTGCA AGATGCCTCC TGATTGCATA CTCTGGTGAG 
    AACAATGGAG GTCAGCGTTC CAGCAACTCG CCTGAGGGAT CATATAACAG 
    GATTTTCGGC ATTCCATCCA CTCGCTAAGG GATCATATAA CAGAGGTCTT 
    GTTTACATCT TGTAAGATGG CATCCAAGGA TAGATGTGGC ATTGTTTTTT 
    TTCCTCTTTT GCACCATGAT CTGATAATCA CCTTGCTGCA TGTTCATACT 
    GAGATTTTGA TCTCTCATGT AACGGGATTT TATGCCATTT ATGCTTTTCC 
    TGGTTGGAAG TTGATGTTAA ATTTAACCAT GATTATT

    Gene models with high sequence identity

    1. AT2G16710.1 [+] show detail - Iron-sulphur cluster biosynthesis family protein
      E-value: 4e-52; Score: 202.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D FeS cluster biogenesis 1.5e-24
    HMMTigr FeS cluster insertion 3.6e-51
    HMMPfam FeS cluster biogenesis 1e-23
    PatternScan FeS cluster insertion, C-terminal, conserved site 0
    HMMPanther HES-B 9.7e-63
    HMMPanther FeS cluster biogenesis 9.7e-63
    superfamily FeS cluster biogenesis 1.8e-27

    See the detailed result >

    AT2G16710.1

    Model type
    Protein coding
    Short Description
    Iron-sulphur cluster biosynthesis family protein
    Computational Description
    Iron-sulphur cluster biosynthesis family protein; FUNCTIONS IN: iron-sulfur cluster binding, structural molecule activity; INVOLVED IN: iron-sulfur cluster assembly; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FeS cluster insertion, C-terminal, conserved site (InterPro:IPR017870), FeS cluster biogenesis (InterPro:IPR000361), FeS cluster insertion (InterPro:IPR016092); BEST Arabidopsis thaliana protein match is: Iron-sulphur cluster biosynthesis family protein (TAIR:AT2G36260.1); Has 10065 Blast hits to 10064 proteins in 1822 species: Archae - 41; Bacteria - 5829; Metazoa - 243; Fungi - 173; Plants - 169; Viruses - 0; Other Eukaryotes - 3610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR