K01809

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01809

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01809

Determination of introduced cDNA(s)

  • J013098K11 - Rice Full-length cDNAs - Original: J013098K11

    full reading [+] show sequence

    Nucleotide sequence: J013098K11 - full reading 
    GATAGACAGT AGTGAGAACA GTTCAGAGAG GAAGCATGTG ACACTTCCCT 
    CTGTCCCTCT CTCTCTCTAG CCTCCAACCA TCGCTTCACC AAGAAGCCAT 
    CACCTCCTCC TCTCTATCAA GTTCTCTCCC CTCTCTTGCT GTCTCTGCTT 
    GCTGCTGCTG CTGCTCGATT CGGCCGGCGG CCATGGCGTC CAGCGCGTCG 
    CGGTTCATCA AGTGCGTCAC GGTCGGGGAC GGCGCCGTCG GCAAGACCTG 
    CATGCTCATC TGCTACACCA GCAACAAGTT CCCCACTGAT TACGTACCCA 
    CTGTTTTTGA CAATTTCAGT GCAAACGTGG TGGTCGACGG CACCACGGTG 
    AATTTGGGTC TCTGGGATAC TGCAGGGCAG GAAGATTACA ACAGATTGAG 
    GCCGCTAAGC TACCGTGGCG CCGATGTCTT TGTGCTTGCC TTCTCCCTAG 
    TGAGCCGAGC TAGCTATGAG AATGTCATGA AGAAGGTTCA GAAAAAAAAA 
    ATCTCTTGCA ATTAATCTGT TAAACCCATA ATGTGGATGC ATTCAGAGAG 
    ATTCAGTATT TCAGTTAGGT TTACCTTGTG CTTTTTGTCC CCTTGAAGTG 
    GTTACCAGAG CTTCAGCATT ATGCACCAGG GGTGCCAATT GTGTTGGTTG 
    GGACCAAATT GGGTGAGTTG TGTGACAGTG AAAGCACAAT TTCCATTTTA 
    TTGCATATCC CCTTGGCTGT GATAATAGAA CTGGTGTGCT GTACATCCTC 
    TGTCTAAGCT TGTCACTTGC TGGTAGTGAT TTGGATGATT TTGTCTTTTC 
    ATTCTTGGAG CATGGAATTG TGTGGTCCCT AAAAATATTG ATGGACCTAT 
    AATAGTTACT ATAACTCACC AAGATTTAGT CCTTGCGATG TTTAAGTAGG 
    AACTATTGCA TTTTGTACGT TCTGTCTTGT ACCTTGCCAG TAGTATTTCA 
    CCGGCTCGGA TCAATTTACC TTATCACTGT TGGATTATGA TTCCTCAAGG 
    AATTGTTTGG AACTATCTTA ATTTTTATTT CACTAAGATT AGTTGCACTA 
    CATTATTTTA TTTTCTCTGA ACAAAATAAA AGTAAATCGT AGTTAAAAAA 
    AGAGAGGCAA GGTTTATGAA TGAGCCAATG AGGTTTCTTT CTCTTTTTTT 
    TTCACTCAAA CAATTTCAAA ACCTCCATAA TTGATGTTTG GAAATACCAA 
    TTCTTGTTTT CTTCAAATGG AAAAGTCCAA CTACCTCCTT AAACTTATGA 
    TAGAAGTCCA TTTAGCACGT TGAACTTTAA AACCGGACAA CCAACCCCCT 
    AAACTTTGCA ATGCCGTTTA TATAACCTCC TAAGGTGATT TTGAATAGTG 
    GTTTTACGTA TTTGGGATCT TAAACAAGCA GCTTTAAATA ACTTATATAA 
    TACATTTATG TATCATCAAT TGTAGTTTGT CAATTTATAA TATAGAGTGA 
    TGTCATATTA TTTTTACAAT GGTATAAGTG AGAGCGAACA AGGGATAAAA 
    AGAAATATTT AAGTGAAAAT TTTAACATAT GCGTATGTCA CATGATCAAA 
    GCTCATCCAA TTTATATGCC AATTAAATAA AACAACTTTG TAAAACCACC 
    TTAGGGTTCC ATATGAATGG TATTGTAAAG TTAGGGGGTT GAATTTCCGA 
    TTTCAAACTT CAGGATTCTA GATGGACTTT CAATGAAAGT TTAGGGGTTT 
    ATTTGGACTT TTTCTGCTTT AAATTGAAGC TTATTTGTTA GTAACTTACC 
    GAAGCAAGAA TTCGGTTTCC GGAACTCAAA GTTCCAAGCT CTTACCTAGA 
    TGGGAGACAC TATATTCCTT TGCAGTTAAT CATCTAACAT AGTAACCACT 
    ACAATTAATT AAACAGATGA TAATTCTCTA GTACTAAATA CTTAAGTAAA 
    ATAAATGTTG CACCTGTTTT AAAAGGAAGG TTGCACTTCA GTAATATTGA 
    ATGAAATAGG CTAGTGAAAT TTACCTAGTA ATTATGCTGA TCATGTTTTC 
    AAGTTTCTTG CATTTCGCCT TGGATTTTTA TTTTTTTTTT GAAAACCAAG 
    CCTACAATCT TATCTTGCAA CAAATCTCAA TCAGTTACTG TTCAATTAAA 
    CCACAACTTT TGTCGACCAT ACAGATCTTC GTGAAGATAA ACACTACTTA 
    CTTGACCATC CTAGCTTGGT GCCTGTGACT ACAGCACAGG GAGAGGAACT 
    CCGCAAGCAC ATTGGCGCAA CGTGTTACAT CGAATGCAGC TCAAAGACAC 
    AGCAGAATGT AAAAGCTGTG TTTGATGCTG CCATCAAGGT AGTAATCAAG 
    CCTCCAACAA AGCAGAGGGA CAGGAAGAAG AAGAAAACAC GGCGCGGATG 
    TTCTTTCTTC TGCAAGGGTG TCATGTCCAG AAGAAGGCTA GTATGCTTCA 
    AGTGAACAAG AGGGGTTCTT TGATGAGCAG AGCAGAGGTC TGTGAGACAA 
    AATGATGTCT TGTGTTTGAT AATTGCTTTA TCTCAAAAGT TCCAGTTTGA 
    TAGTTGCATT TCC

    Gene models with high sequence identity

    1. AT5G62880.1 [+] show detail - RAC-like 10
      E-value: 4e-59; Score: 47.80

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 4.9e-32
    Gene3D no description 1.2e-05
    HMMSmart Ras small GTPase, Ras type 4.9e-06
    HMMSmart Ras small GTPase, Rab type 1.6e-05
    HMMSmart Small GTPase, Rho type 1.1e-34
    HMMSmart Small GTPase, Rho type 5e-05
    HMMPfam Ras 2.6e-33
    HMMPfam Ras 5.1e-06
    superfamily P-loop containing nucleoside triphosphate hyd 8.6e-32
    superfamily P-loop containing nucleoside triphosphate hyd 4.4e-10
    ProfileScan Small GTPase, Rho type 15.076
    Coil coiled-coil 0
    HMMPanther RAS-RELATED PROTEIN RAC 3.2e-80
    HMMPanther RAS-RELATED GTPASE 3.2e-80
    HMMPanther GTPASE PROTEIN ROP 2e-48
    HMMPanther RAS-RELATED GTPASE 2e-48
    HMMPanther RAS-RELATED PROTEIN RAC 1.7e-11
    HMMPanther RAS-RELATED GTPASE 1.7e-11
    FPrintScan Ras GTPase 6e-22
    FPrintScan Ras GTPase 6e-22
    FPrintScan Ras GTPase 6e-22

    See the detailed result >

    AT5G62880.1

    Model type
    Protein coding
    Short Description
    RAC-like 10
    Curator Summary
    A member of ROP GTPase gene family.
    Computational Description
    RAC-like 10 (RAC10); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras small GTPase, Rab type (InterPro:IPR003579), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: RHO-related protein from plants 10 (TAIR:AT3G48040.1); Has 24116 Blast hits to 24088 proteins in 664 species: Archae - 8; Bacteria - 52; Metazoa - 12643; Fungi - 3430; Plants - 2696; Viruses - 20; Other Eukaryotes - 5267 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR