K01834

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01834

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K01834

Determination of introduced cDNA(s)

  • J013130K04 - Rice Full-length cDNAs - Original: J013130K04

    full reading [+] show sequence

    Nucleotide sequence: J013130K04 - full reading 
    GGAAAAGCAC AAGGAAGAGG CCATGAGGAG CGGCGGCGGC GGCGGCCGAG 
    CAACTCGCGG TTAGCAGGGA ACGGCGCCTC AGTGCACCGC GCCGCCGCGG 
    AACTCTTGCG ATGCTCCACC TCCACGGCAG GACGGCTTCT CCGACTCGGC 
    TCCTCCTCTT GCCCCTTCTC TCGCCGCTTC CCTCACGCCC AACCCTAACC 
    CGGCCCTGGC ACCCTTGCCG CCAGCACCTC TCTTGCTGCC ACTGGTGCCG 
    CATCCGGGGA AGCAAGTGCA GCAGGAGAAT GCTGAGGAAG GAGAAGAACC 
    GAGGCCAACG CCGACAGCCA TGGAAAAGAA GGTGGTAGAG CCTTCAGAGA 
    AGAAGACATT TGTGGATTTG AAATCAATGT GGGGTAGAGC TGAAAAGAAA 
    CTAAAGCCTA TAGTTGACAG CAATAATATT TCTGAGCATT CAGTTGTGAG 
    GAAAGACACT GAACCTACTA CACATGCACC TGCAACTGAG AAGATTGGGT 
    GTAGTAGAGC ATGTGAAGTT GGATTTGCAG GAACAGAAAC TCATGTGCCC 
    TATGAAAGTA TAGAAGTATC AAGACCTCAA GATATAGATG GCAACATAGA 
    AATATCCAAA CCTCATGTTG CAATTTCAGA ATCTAAAGAG GAAGATTGGC 
    TAGAAGATGT TGATGAGGAT GTTGGTTTTC TACCACATGA TCCTGGAAAG 
    AGGATTGCCA TCTCAGATTA TAGTGTGAAT CAGCAAGATG CAGTGAGGAT 
    GAAGTATATT GCACTTGGGC CTTGTCGACC ACCACTAGAG CAATTTCCTC 
    AAAGAAATTG TGGAGGTAAA CGTCGTTTCA TAAGTAGCTG GTTTGATAAG 
    TATAGTTGGC TTGAATATAG CGAGGAAAAG GATGTTGCAT TCTGTTTTGT 
    TTGCTACTTG TTCAAAGATA GAACTAATTA TGTTGGTGGG GATAGTTATG 
    TGAATGAGGG CTTTAGACAA TGAAACCATT TGGATAGATT TGATAAGCAT 
    GTTGGTTCTG TTAGTAGTGC ACATAATCTA GCTCAAGAGA AATATAATAT 
    GTCGATCATT AGACCTAATA CAACAATTGG TGAGAATTTA AGGAAGAGAA 
    GCAAACATGA CAAGGTTGTT TATAAGGCCC GCTTAACTTA CTCACTTAAG 
    TGCTTGAGAT TTCTTTTACG GCAAGGGTTG GCTTGTCGTG GGCATAATGA 
    AAGTGAAGAA TCACTCAATA GAGGAAATTT TCTTGAGCTT CTAAATTGGT 
    TGGCTAGAAA TTTCAAAGAG GTCAACGAGG TTGTTCTAAA GAATGCTCCA 
    AAGAATTGTA AAATGACATC CCCTAAGATA CAAAAATAAC TTATTGGATG 
    TTGTGCTAGA GAAACTACTA AACTTCTCAT GGAAGATCTT GGGGATGAGT 
    TTTTTTTAAT TCTTGCTGAT GAGTCTAGCG ATGTGTATCA AAATGAGCAG 
    TTGGCACTTT GCTTGTGTTA TATTGACAAG AAAGGGAGGG TTGTTGAGCG 
    CTTTCCTGGT GTTGTGCATG TTGAGAATAC TACAGCCTTG ATACGTAGAG 
    ATGCAACAAT CATTTAGCTT GTCTAAAGTT CATGGTCAAG GATATGATGG 
    GGCTAGTAAC ATGAAGGGTG AGGTTAATGG TCTAAAGAAG CTGATTATGA 
    ATGAATCTCC TTCTGCTTAT TATGTTCATT GTTTTGCACA TCAACTATAG 
    TTAACTCTTG TGGCTGTTGC TAGGGAGAAT GGTGACTGTG TTTGGTTTTT 
    TGAGCAACTT GGATATTTGT TGATTACTAT TGGGATTTCT TGTAAGAAAC 
    ATGAAATGCT TCGAGTTGCT CAAGCTCAAG AGATTGTAGA AGCTTTGGAA 
    TTTGGTGAAA TTGAAAGTGG GCAGGGTCTG AATCAAGAGA TGGGTTTAGG 
    TAGGCCAGGA GATACACATT GGAGATCTCA CTATAAAACA GTGCAACATA 
    TTCTTATTTT GTATCGCTCA ATCCGGAAGG TCCTATTACA AGTTGGAAAA 
    GATGACTTAA ACATAACTTT GCAAAGGAGG GAGCAAGATA TTGTGAATGC 
    GGTTGAGCTC ATTATTTTGA CAAAGATGCA ATTGGAGATG TTGCGGCAAG 
    ACGATGGGTG GGAGAATTTT TAAAAAGAAG TCACCTCTTT TTGTATGAAG 
    AACGAAGTCA AAGTTCCTCA TATGGATGCT AGATACAAGC AGTGGCGGAC 
    CCAGCATAAA AATTTAGCTA TGGCGGATCA TCACACCAGA ACGAATATTT 
    TAAAAATAAA GTAGCATTTT ATTATACACA AACTATAATA TGTTCGCACT 
    TATTAGAATA TATGCTATTA ACGATGATTA TAATCCC

    Gene models with high sequence identity

    1. AT1G19260.1 [+] show detail - TTF-type zinc finger protein with HAT dimerisation domain
      E-value: 2e-113; Score: 185.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR11697:SF9 1.60000240695997e-23
    HMMPanther PTHR11697 1.60000240695997e-23
    HMMPanther ZINC FINGER PROTEIN 237 3.5e-24
    HMMPanther GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC F 3.5e-24
    HMMPanther ZINC FINGER PROTEIN 237 6e-27
    HMMPanther GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC F 6e-27
    HMMPanther gb def: OSJNBa0061C06.15 protein 1.6e-54
    HMMPanther GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC F 1.6e-54
    HMMPanther gb def: OSJNBa0061C06.15 protein 1.9e-21
    HMMPanther GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC F 1.9e-21

    See the detailed result >

    AT1G19260.1

    Model type
    Protein coding
    Short Description
    TTF-type zinc finger protein with HAT dimerisation domain
    Computational Description
    TTF-type zinc finger protein with HAT dimerisation domain; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, TTF-type (InterPro:IPR006580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09660.1); Has 1044 Blast hits to 976 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 607; Fungi - 1; Plants - 428; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR