K01847

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01847

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K01847

Determination of introduced cDNA(s)

  • J033127E15 - Rice Full-length cDNAs - Original: J033127E15

    full reading [+] show sequence

    Nucleotide sequence: J033127E15 - full reading
    GGCTGAAACA ATAGAGGAGC ATCCATGGGG AACATCCTCC GGTGCTTCAA 
    GGGAGACGAC GATGGCGGTG ATCACTACCC CTACTACAAG CCAACCTCCA
    GACCACACTA CCAGCCTCCT CACTACCATG GTCAACCTGC AGCCCCCCCA
    GCTCCACCCC AGCAGCAGCC TCTCGGCCCC CATGGCGTCA CGCCGTCCAC
    CGTCGGCGTC GCCGCCCTGG CGCACGACCT CCTCAACTTC GAATCCACAT
    CCATGGTTCC TGATGGCCTC AGTCAGCACG TTGTATCATC CAGGAAAGCA
    CAGGTTAAAT GGGCATTCTT GAATTTTACA ACTTTCCGAT CCCATCACTC
    CCCTCAGCAT CGTCAAACTA CCAACCATCC TCGCTACCAG AGGGCGTGCA
    GTTTGTGCTA AACACTTTGC CGGTTTATGA CAAGTGCATT GGAGATGGTG
    ATGGATTTAC TGCATATGTT TCCACAACAG ATCCGAGGGA ATCTGCAAAT
    GTGCCATTGG AAGTGCATGA GTTGGTGATA GCAAGAACTC AAGCACGCAA
    ATGTAGGGAT TACCAGAGTG CTGATGCTCT TCTAAGCAGC CTTGATGAAG
    CTGGATACAA GATAATATCT TGTTCAGATG ATGAGGTCCT CGCAAGGAAA
    TACAGAATAA GAATGAGGGG AATTGATGCA CCGGAGCTTA AGATGCCATA
    TGGGAGGGAA TCACGGAATG CATTGGTGAA ACTAATTGGT GGGAAGAGCG
    TTAAAATTTA TGTCTATGAT CTGGACCAGT TTGGGCGCTA CGTTGGTGAT
    ATCTATTGCA ATAATTTGTT CATTCAGGAG CAAATGCTGA AGAATGGCCA
    TGCATGGCAC TTCAAGACTT ATGATAAACG CCCAGAGTTT GCAAGATGGG
    AGAGAGAGGC AAAAGCTGCA AACCGAGGGC TTTGGGCGTC AGGGAATCCT
    GAGAAACCAT GGGATTGGAG AAGAGACCAA CGCAACGCAA GACAGGACGC
    CATTCAGGTG TACTGAAAGT TGAGTCTCCA GCACTCATTT GGCCACAAAT
    GTGCATATAT GTGTAATTGG GTAACGTTGT TGTTGAGTAG CTTTGCTTGC
    AATGAATGTG TCAGAAACCA AAAGCCAAAA TGTATGTGTG GTTTATGTTG
    TACGAAAGAG ATTATATATC CAGGAGTCAG CTGTGCCGTG TGATGTGGAG
    GTGAAATGTG GTCAATGCAA GTGAGCTTTG TTC

    Gene models with high sequence identity

    1. AT2G40410.2 [+] show detail - Staphylococcal nuclease homologue
      E-value: 1e-78; Score: 60.50

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Staphylococcal nuclease (SNase-like), OB-fold 8.3e-27
    HMMSmart Staphylococcal nuclease (SNase-like) 1.20000117458134e-22
    Gene3D Staphylococcal nuclease (SNase-like) 3.00000067992862e-25
    ProfileScan Staphylococcal nuclease (SNase-like) 0
    HMMPfam Staphylococcal nuclease (SNase-like) 5.90000000000001e-19

    See the detailed result >

    AT2G40410.2

    Model type
    Protein coding
    Short Description
    Staphylococcal nuclease homologue
    Computational Description
    Staphylococcal nuclease homologue; FUNCTIONS IN: hydrolase activity, acting on ester bonds, nuclease activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Staphylococcal nuclease (SNase-like) (InterPro:IPR006021), Staphylococcal nuclease (SNase-like), OB-fold (InterPro:IPR016071); BEST Arabidopsis thaliana protein match is: Ca-2+ dependent nuclease (TAIR:AT3G56170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR