K02121

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02121

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02121

Determination of introduced cDNA(s)

J033041I03 - Rice Full-length cDNAs - Original: J033041I03

full reading [+] show sequence

GACTCTCCTA CGCTTCCACC CCCCATTCCC ATCCCCTCCA CCCAGATCGC 
CGCCGCCGCC TTCGCCTCGG ACGGCCGTAC GGCGCCGTCC ACCGCGCACG 
TCTCCGGCGA TCTACAGGTG TAGATCGCTT CCGGAGACAT CCAACCGCGG 
CCATGGCGAC CTTCGCGAAA CCTGAGAACG CGCTCAAGAG AGCGGAGGAG 
TTGATACATG TTGGGCAGAA GCAGGCAGCG CTACAGGCGT TACATGATCT 
CATCACTTCA AAAAGATACA GGTCATGGCA AAAGCCACTC GAAAGGATTA 
TGATGAAGTA TGTGGAGCTC TGTGTAGACC TGAGGAAGGG CAGGTTTGCG 
AAAGATGGCC TTATTCAGTA CAGGATTGTC TGCCAGCAAG TGAATGTGTC 
ATCCTTGGAG GAGGTGATAA AACACTTCAT GCAGCTTTCC AATGAGAAAG 
CAGAGCAAGC AAGGAACCAG GCGCAAGCAC TGGAAGATGC CCTGGATGTA 
GAAGATCTGG AAGCAGACAA GCGGCCTGAG GATTTGATGC TCAGCTATGT 
CAGCGGGGAG AAAGGGAAGG ACCGATCAGA CAGAGAGCAT GTCACACCAT 
GGTTCAAGTT TCTCTGGGAA ACATACAGAA CAGTTCTTGA GATATTGAGA 
AACAATTCAA AGCTTGAAGC ATTATATGCT ATGACTGCTC ACAAGGCTTT 
TCAATTTTGT AAGCAGTATA AGAGAACGAC TGAATTCCGT AGGTTGTGCG 
AGATAATAAG AAATCATCTT GCTAACTTGA ACAAATACCG TGACCAGCGA 
GATCGTCCTG ATCTGACTGC CCCAGAAAGC TTACAGCTAT ACCTGGACAC 
TAGAGTTGAA CAACTAAAAA TTGCTACAGA GCTCTCTCTC TGGCAGGAGG 
CCTTTAGGTC TGTGGAAGAC ATCCATGGCT TGATGAGCAT GGTGAAGAAA 
ACACCAAAAC CATCTGTCCT GGTTGTGTAT TATGCCAAGT TGACTGAAAT 
ATTCTGGATA TCTGATTGCC ACTTGTATCA TGCATATGCA TGGCTTAAGC 
TATTCTACTT GCAGAAAAGC TACAATAAGA ACTTGTCTCA GAAGGACCTT 
CAATTAATAG CTTCTTCTGT TTTGCTTGCT GCACTTGCCG TGTCACCATA 
TGACCATAAA TATGGCGCAT CTCATCTTGA GCTTGAAAAT GAGAAAGATC 
GTAATCTGCG GATAGCTAAT CTCGTCAACT TCTCCCTTGA CTCCAAGCGT 
GAGAATAGAG AAGTGCCATC AAGAGCATCT CTTTTTTCTG AGCTGGCTGC 
CAAAGGTGTC ATTGCCTGTG CTTCACAAGA TGTCAAAGAT TTATACAACC 
TTTTGGAACA CGATTTTCTT CCTCTGGATC TCGTATCCAA AGCACAGCCA 
CTGCTATCTA AGATTTCAAA GATTGGAGGG AAGCTTTCAT CAGCTCCCTT 
GGTTCCAGAA GTTTTTCTGT CACAGTACCT TCCTGCTTTG GAGAAGTTAA 
CAACTTTAAG GGTGTTGCAA CAGGCTTCCC AGATATTTCA GTCTGTGAAA 
ATTGATATGC TCTCAAGAAT GATCCCATTC TTTGACTTTT CTGTTGTTGA 
GAAGATCTCT GTTGATGCCG TGAAACACAA TTTTGTTGCT ATGAAAGTCA 
ACCATTTATC AGGAGCTGTC CATTTTGGGA AAATGGACAT TGAATCTGAT 
TGTCTCAGTA ATCACCTAAG TGTTTTGGCT GATTCTCTAA ATAAAGCAAG 
GAGCCTTATC CATCCACCTG TGAAGAAGCC ATCCAAGCTT GGTGAAAACT 
TAACGAGTCT TGCTGCAGTA GTGGAGAATG AGCACAAGCG TCTTCTTGCG 
AGGAAATCAA TTATTGAAAA ACGCAAAGAA GATCTTGAGC GCCAAATATT 
GGAAAAGGAA AAGGAAGAAG AAAAAAAGAG ATTGAGTGTT CTCAAGAAAT 
CTGCAGAAGA TGAAAGGATA AGGCTTCTCA ATGATGTAAA ATTGAGGGAA 
CAGGAGAGGA TCCGTCGACA ATTGGTTGAA AAAGAAAAGA TAGAGGCAGA 
AGAACTGCTT CAGAAACAGA TAAAGGAGAT AGCAAAGAGA GGAGGAAAAA 
AACCTGTCCT TCAGGGGGAA GTTACTAAGG AGGCTGTGAT GGAATTGGCT 
ATGAATGAGC AGTTTAAGGA GCGCC

Gene models with high sequence identity

AT4G11420.1 [+] show detail - eukaryotic translation initiation factor 3A
E-value: 0; Score: 877.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Proteasome component (PCI) domain	4.9e-17
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMPanther	EUKARYOTIC TRANSLATION INITIATION FACTOR 3, T	7.8e-305
HMMSmart	Proteasome component (PCI) domain	6.6e-07

See the detailed result >

AT4G11420.1

Model type: Protein coding
Short Description: eukaryotic translation initiation factor 3A
Curator Summary: Encodes a subunit of eukaryotic initiation factor 3 (eIF3), a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilization of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits.
Computational Description: eukaryotic translation initiation factor 3A (EIF3A); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23330.1); Has 151795 Blast hits to 76455 proteins in 3156 species: Archae - 1231; Bacteria - 22686; Metazoa - 70860; Fungi - 11049; Plants - 6472; Viruses - 438; Other Eukaryotes - 39059 (source: NCBI BLink).
Link: InterPro Scan - TAIR