K02716

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02716

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02716

Determination of introduced cDNA(s)

  • J013124N15 - Rice Full-length cDNAs - Original: J013124N15

    full reading [+] show sequence

    Nucleotide sequence: J013124N15 - full reading 
    TGCTCTCCGC ATTCTGTTTT CTACTATTCG CTAGTATACT GCTACTAGTT 
    CTTCTTCTTC TTCTTCTGTC TGATCCACCA GCAAGGTTAG GTTAGGCTTC 
    TTCTTGAGCA AGCGATTCGG GGTAGTTGAG CTGGTTGCAA CCCCGCTTTG 
    TTGATTCGTT CTTTGGCGGC AAATTCGATA TTCTGTTTCG CTCCCCCCTG 
    GGTTTCTGCT TGGAATTTAG GGGGTCACGA GAGCAAACCA CGCGGTCCCG 
    TTCTTGAATT GCTGGAGAGG GGTGGGGAAG AAAGATCGGG GGAAGAGGGG 
    ACGCGAGCTC AGCGGGCTTT GGTGCTTAAG TTCTTTCGGG TTTGTGTTCT 
    TGTGAAGTTC CTCTGGCATG GGGACGAGGA GGAGGAGGAA TCCGGTGATA 
    TTCTTGTTCT TGTGGTTCGT CATGGCGTTT GAGCTGTGTG CATCTCTGAA 
    TCATGAAGGT GTCGCTCTTA TGAGGTTTAA AGAGATGATT GATGCTGACC 
    CATTTGATGC TCTGTTGGAT TGGGATGAAG GGAACGCCAG CCCCTGTTCT 
    TGGTTCGGTG TGGAGTGCTC GGATGATGGT CGAGTTGTGG CCCTGAACTT 
    ACCAAATCTT GGTCTAAAGG GTATGCTACC TCAGGAGATT GGAACACTTG 
    CCCATATGCG TTCCATCATT CTACACAATA ACTCTTTCTA TGGAATCATC 
    CCCACAGAGA TGAAATATTT ACATGAGTTA AAGGTGTTGG ATCTAGGATA 
    CAATACTTTC AGCGGACCAT TTCCATCGGA GCTAAGAAAT ATTTTATCCC 
    TGAAATTTCT CTTTCTCGAA GGCAACAAAC TTTCTGGCAG TTTGCCAATT 
    GAATATGAGC TCGCCTCGAT GGACCAGACT TCTTTAAATA AGATATCTAC 
    AGAAAGGAAC GAAGAGAATG CCACAAGAAG AAAACTTCTA GCAAGCAAAC 
    AAAAACGTTC CCAAAAGAAC AGGATGCTTT TGTCTGGAAC ATCTGAATCA 
    CCACTGGAAA ATGTTACAAT GCCAAAGTCT CACCCTGATA ATATAACAGT 
    GCCACATCGT CCCGTAGCTC CTCGATCAAG TTCTCCACAG CCGCCACTCC 
    CTTCCGAACC CATTCCCTCC CCTGCCCCTT CTATGCCCTC CCCTGCCCCT 
    TCTGTATCCA CCACTACAAA CGGAACTTCA GGCCAAGAAA ACAAGAGCAA 
    GACAGCAATA TATGCATCCA TCGGAGGAGT GGCCTGCTTG GTGGTTGTGG 
    CCATGTCAGC TGCACTCATC CTTTGTTACC GGCACAGGAA GACTAGTACT 
    GTGGTACCTT TTTCTCCAAC AGCAAGTGGG CAATTACATA CTGCTACTTT 
    GGGAGGAATA ACTAAATTCA AACGCTCAGA GCTTGAAACA GCCTGTGAAG 
    GTTTCAGCAA CATAATTGAC ACACTACCTA GATTCACATT GTATAAAGGA 
    ACTCTCCCGT GTGGAGCAGA AATAGCTGCT GTGTCTACAT TGGTGACTTA 
    CGCAAGTGGG TGGACAACTG TAGCTGAAGC ACAATTCAAG GATAAGGTTG 
    AAGTCTTATC AAAAGTGAGC CATAAGAATT TAATGAACCT TGTGGGTTAC 
    TGTGAAGATG AAGAACCATT CACTCGGATG ATGGTGTTTG AGTATGTTTC 
    AAATGGAACA CTGTTTGAAC ACTTGCATGT TAAAGAAGCA GACCAATTAG 
    ACTGGCAGTC ATGCTTACGG ATAGCGATGG GAGTGATGTA CTGTCTGAAC 
    TACATGCAAC AGCTGAACCC TCCTGTACTG CTGAGAGACC TAAGTACTTC 
    TTGCATATAC TTGACTGAAG ACAATGCTGC AAAGGTTTCC GACATCAGTT 
    TTTGGGGTGA TAAAAAAGAA GACGAAAAAT CTGAGGCTTC TGATGAGCAC 
    ATCACAGTTT ATAAGTTTGC TTTGCTTCTG CTTGAGACAA TCTCTGGAAG 
    GCGCCCATAT TCTGATGATT ATGGCCTCCT TATTCTTTGG GCACATAGAT 
    ACCTCATTGG TGACAAACCC CTGATGGACA TGGTTGACCC CACACTCAAA 
    TCAGTCCCTG AGGAGCAAGT CAGAGAACTC ACAAAGCTGG TGAAATTATG 
    CTTAAGTGAA GATCCCATGG AGAGGCCAAC GGTGGCAGAG GTAACCGCAT 
    GGATGCAAGA GATCACTGGG ATTTCTGAAG AAGAGGCGAT TCCAAAAAAT 
    AGTCCGTTGT GGTGGGCTGA ACTTGAGATC ATCACATCAT AAAAAGCCAG 
    TTCATTGCGC AATATTATTG CTGCGGCAAC GGTGTCCATT CTTGCCTAGA 
    TCACAGCAAA TTGTACAGTC GTTTAGGACC CATTTTGGGC AGGCAATTCA 
    GTTGTACAGA TATGCCTGCA CTGCTCACAC CCATTCTTTC ATTCTTTGGT 
    TCATGAAACA CACATAATCT CTGAAGTCCA CTAAACAGTT GTGACGAAAG 
    CGAGGAGTAT AAATTTTCTA CTAGTTTCTA CACACAATTC CTGCACTGAA 
    CAGATTTGTT TGAACAGTTG AGTCTACTCA GAGATACCTG AAGTCTGATG 
    GTTGATACTT GAT

    Gene models with high sequence identity

    1. AT5G45840.1 [+] show detail - Leucine-rich repeat protein kinase family protein
      E-value: 7e-107; Score: 385.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.8e-28
    Gene3D no description 0.00056
    Gene3D no description 5.2e-17
    HMMPanther RECEPTOR PROTEIN KINASE-LIKE PROTEIN 1.1e-133
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.1e-133
    HMMSmart Tyrosine-protein kinase, catalytic domain 4.6e-05
    HMMSmart Serine/threonine-protein kinase domain 0.00015
    HMMPfam Serine-threonine/tyrosine-protein kinase 2.5e-20
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 7.9e-11
    superfamily Protein kinase-like domain 4.7e-30
    superfamily L domain-like 5.1e-30
    ProfileScan Protein kinase, catalytic domain 15.793

    See the detailed result >

    AT5G45840.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat protein kinase family protein
    Computational Description
    Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT4G18640.1); Has 72134 Blast hits to 33602 proteins in 773 species: Archae - 8; Bacteria - 571; Metazoa - 4648; Fungi - 244; Plants - 63020; Viruses - 48; Other Eukaryotes - 3595 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR