K02729

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02729

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02729

Determination of introduced cDNA(s)

J023081E17 - Rice Full-length cDNAs - Original: J023081E17

full reading [+] show sequence

GCTCCTAGCT TCACTCTCTC CGCTGCTGCT GCTGCGTTCG GTAGCTAAGC 
TTAGCTTAGC TTGCGAGCTG CGTCGCCTAG CTCCGATTGG ATCTCGCTCT 
CGAGCTCGAG CTCGAGCTCG GATTCCATGG CGAATTGGTG ACTCGGTGGC 
AAGGTCCCGT CTCCTGGTGT CTGGAATTGG GCGGCGGCGG CGGGATGAGG 
AAGAGCTGGG GGCTCGGGCG GCCGTCGGGT GACCGGCGGT GGCTGCTCCC 
CTTCGCCGCG AGCCTCCTCG TCTCGGCGAC CCTCTTCCTC GCCGCGGCAT 
GCGGCCTCTT CTCCCCGCCC TCTCTCGCCG ACGGCGACGA CGACTCCATC 
CTCATCGACG TCGCCACCTG GGACACCGCC TCCGCCGCAG AATCCGAGAT 
CAAGAACCGC CTCCTCGACT CCAACTCCGA CTCCGACGAC GGCGACAACC 
CGGACGACGC GGCGGTGAAC TCGGACGCCT CCTCCGCGGA TCCCCCGCGG 
ATCGCCTACC TCCTGGAGGG AACCAAGGGG GACGGGGCGC GGATGAGGCG 
GGCGCTGCAG GCGATCTACC ACCCGCGGAA CCAGTACATC CTCCACCTCG 
ATCTGGAGGC GCCGCCGCGG GAGCGGATCG ACCTGGCCAT GTACGTCAAG 
GGGGACGCCA TGTTCAGCGA GGTCGGGAAC GTGAGGGTCA TCGCCAAGGG 
CAACCTGGTC ACCTACAAGG GGCCAACCAT GGTGGCCTGC ACGCTGCACG 
CCGTCTCCAT CCTCCTCAAG GAGGGTCTGG AGTGGGACTG GTTCATCAAC 
CTCAGCGCCT CCGATTACCC CCTCGTCACG CAGGATGATA TACTTCATGT 
GTTCTCTTCC TTGCCGAGAA ATCTTAATTT TATAGAACAC ATGCAACTAT 
CTGGTTGGAA AGTGATTTCA AGAGCAAAAC CTATTGTTGT GGACCCAGGG 
CTCTATCTAT CAAAAAAGTT CGATCTTACC ATGACTACTG AGCGGCGAGA 
ATTGCCAACA TCTTTCAAGT TATATACTGG TTCTGCTTGG ATAATGCTCA 
CAAAAACCTT CCTTGAGTAC TGCATATGGG GATGGGACAA TCTCCCACGG 
ACACTCCTTA TGTACTATGT TAACTTCATC TCCTCTCCAG AAGGTTATTT 
CCACACCGTC ATCTGCAACT CGGACGAGTT TCGGGGCACT GCGGTTGGCC 
ATGACCTGCA CTACATTGCT TGGGACTACC CTCCAAAGCA ACATCCAAAT 
ATGCTCTCCA TGAAGGACTT CAACAAGATG GTCAAGAGCG GCGCGCCGTT 
TGCACGGAAG TTTCCCAAGG ATGACAAGGT CCTGGACAAA ATCGACCGTG 
AGCTGCTGCA CCGCTCCGAA GGCCAGTTCA CCCCCGGAGC ATGGTGCGAC 
GGGAGCTCTG AAGGAGGAGC TGATCCATGT TCCTCAAGGG GTGAAGATTC 
GGTATTCGAG CCTAGTCCCG GTGCCGAGAG GTTGCGAGGC CTCATGAAGA 
AGGTGCTTTC ATGGGATTAC CGCAATGGCA GCTGCTCGTC GCTCGGTTAC 
GATCAGACAA AACGAGATTG GTATGTTCCA AAAGGTAGAG GATAATTCAT 
GTTGTCCTGG TACCTTTTCT TGTAAATTCA GATAGCTGAA CTTGACCCCT 
TCCATTGAAA TGAACAAAGC TGATGAATCC AACATTCTGA CCAAGAAAAA 
AGATGTTG

Gene models with high sequence identity

AT1G03520.1 [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
E-value: 6e-155; Score: 544.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	GLYCOSYLATION ENZYME-LIKE PROTEIN	4.2e-209
HMMPanther	Glycosyl transferase, family 14	4.2e-209
HMMPfam	Core-2/I-Branching enzyme	3.7e-61

See the detailed result >

AT1G03520.1

Model type: Protein coding
Short Description: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Computational Description: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT4G03340.1); Has 943 Blast hits to 943 proteins in 116 species: Archae - 0; Bacteria - 40; Metazoa - 553; Fungi - 0; Plants - 315; Viruses - 14; Other Eukaryotes - 21 (source: NCBI BLink).
Link: InterPro Scan - TAIR