K02915

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02915

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02915

Determination of introduced cDNA(s)

  • J033070K17 - Rice Full-length cDNAs - Original: J033070K17

    full reading [+] show sequence

    Nucleotide sequence: J033070K17 - full reading 
    CAAGGCGAGA TCGAGCCTGG AGCGGCTCGC CATCTCTGCC GCCGGTCCGC 
    CGCCTCGCTC GCTCGCTCGC CGTCCGCCGC CTCGCTCGCT CGCTCGCCGT 
    CCGCCGCCGC CGCCTTGCTC AGTTGCTCGT CGTCCTCCGC CGCCGCGGCG 
    CCAGCACGCC TCGTCCTTCC CCTCTCTCGG CTCAGTACTT TGGTTTTCTC 
    CCATGTCGAC ATCATTAGCT GAAGCTTCGC AAGGAGGATA TATCAAAGAG 
    GTCATTGCAG AGGGCTCTTC GGGAGGCTTA TCATCATCAA CACAATTGTT 
    GTCTGCAAAA CGAAAGTTAG CAGCATCGAA TCCTTCGACA GCGAAGCGAA 
    GACGATCACC TATTGTATTG CCAATAGTCA GGTCTCCAGG AGTGCGCCAA 
    ATTATTTCTC AAAATGCTCT CATCATGGAG AGATCACAAG TTCCTGGTCA 
    TATGTCCCCA AGTGCAGAGT CTCCAAGAGC TAGATCTCTG TCTCCAGTGG 
    CAAGGTTCGT ATCAAGTCCG TCTACTATCC TTGAGCTGGA TGTTGAAAAT 
    CAGCCAAGGG AATCAAGTCA ACCAACACCT CATGTTGTGA CTCATCGTTC 
    TGGTTAGCAC CTAATACATT TGTTCTAAAG GACTGGAAAT TTGATCCTGA 
    TGTAGCACGT GCAGAACTTT TAAGGATGAT TGTTTTGCAA GAACTTCCTT 
    CCAGCTTTGT TGAACACCTT GGTTTTAGAA GATTTTGTGC AAGCTTGAAC 
    CCGTACTTTA GGGTGGTTTC TAGAACTACT ATAAAGGGTG ATTGCTTGGC 
    TGCCTATCAA GAACAAAAGT TAGCTTTGCT TGAGGTACTG AGGAAAACAA 
    ATTCTCGGGT TTCACTGACG GCTGACATGT GGTCATCTAA TCAAAACCTA 
    GGTTACATGT GCATAACTTG TCACTTCATT GACAATGAAT GGAATATGCA 
    AAAGAGGATC ATAAGATTCA CTCAAGTGCG TACCCCACAT GATAGTATAG 
    CTCTCTTCAA TGAAATTATA AAGTGCATTC AAGATTGGCA GATAGAAAGT 
    AAGTTGTTCA GTATTACAGT AGACAATGCA TCTACTAATG ATTCTATGGT 
    TGTGGAATTG AAAGGAAATC TCTTGGGTAA ACTTGCTATG CCTTGCAAAG 
    GAGAGCTATT TCATTTCTGG TGCGCAGCTC ACATCTTTAA TCCTATTGTT 
    CAAGATGGAT TGAGTACTAT CAGTGCTGCC ATATCCAGGA TAAGGGAAAG 
    TGTGAAGTAT GTAAGAGCAT CAGAAGCACG GGAGCAAAAA TTTGAAGAAA 
    TCATTGCACA AGTCGGAATT GTTGAAGAGA AGCGTCCTTC ACTTGATGTC 
    TCCACTCGTT GGAATTCCAC CTATTTGATG CTTTCCTCAT CCTTATTATT 
    CAGGAGGGCT TTTGATTCAT TGGATCGGTT TGATCCTAAC TTTAAAGATG 
    CTCCACAATT TTTCGATTGG GAGAATGCAG AAGTTCTTTG CAAACATCTC 
    AAGGTCTTCT ATGATGCAAC TGTTGTGGTT TCCGGGACAT CATATCCCAC 
    TGTTACTCGC TACTTTCATG AATTTTGGAA AGTGAAGGTG ATGATTCTAA 
    ATGAGTCCAA CAATGAGGAT GATCTTGTTG CTAGCTTGGT TTCTAAAATG 
    GATACAAAAT TTCAGAAATA TTGGGATCTA CAGTTCCTGC AGATTTGGGT 
    TCCTGTTATT TTTGATCCCA GATTTAAGTT GAAATTCCTT GAGTTTAGGC 
    TGAAAGCAGG TTTTGGAGAT AAGGCAACTG GTCCAAATGG ATATCTCCCT 
    AGAATTAAGA GGACAGTCCG TACTTGGTTT GCTGAATATT CTTCACAAAT 
    TTGTGGTCCA AGCACAACCA ATTCTCAAGA AGCATCAACT AGTGGGGTGA 
    ATGTTGGTGG CAGCCAATTT GCTGACTAGA GGCAATATCT TCATGATCAA 
    AGCAAGAGTA AAGTAAAGAC TGAGTTAACT AGATATCTCG AAGATATTCC 
    TCAAGAAAAT GATTTCCCTG ATGATGATTT TGACATACTC TAGTGGTGGA 
    GGGTGAACTC TTGCAAATAT CCAATATCAT CACGCATGGC ACTTGATTTG 
    CTTGCTGTCC CTGCATCCTC AGTTGCATCA GAGTCTGCAT TTTCTACTGG 
    ATAAAGAATC ATTAGCGACT ATAGGAGTAG GTTGGCTAGT GGAACTGTGG 
    AGGCATTGGT TTGCCTTCAA GATTGGATGC GAGCCGATGG TTTTGGTGAT 
    CCATATTCAA TTCAAACTGA TACGGCTGAG GGCGATGATG TTAATATGCA 
    ACTATTGGGA CATTAAATCA TTTGACATCT CAGGCAAATT ACCATGTGAG 
    TTCTATGCAA TCTGGGTTCT GAGAAATTTT GCTAGTTCTG GAGCAGTGGT 
    AAGTGGAGCT TGCTTTGTTT CCCAGCTCAT ATCAGTGTTT CCCACGCATG 
    TCAGATTACA TCCAAAATTT GTACGATGTA TTGGAAATTT AGTTGAGCCT 
    GGGATTTCTG GACTTCTTTT CTGCCGTTGA GCCTGAAATT CATATTTGAT 
    TTTGCCTGGT GAATTCTGCA TGAGTGACAG GAATAGATGC AAGGATTAGG 
    CGGCTTTGTT GCTGTCAGGA TATGCATGTC TTTTGAGTCC GTTTTTTTTT 
    CCCCTTTATG CTGTTGTTAA GCTATGAATA TTTTGGAAGG GGATTTTTTT 
    AGAACAATTT GATTAAGGAT CGGTGGATTT TTATGCCAAA TTGTAGACTC 
    TGCTTTTCGC TGCAGTCACT GTCTTTCAG

    Gene models with high sequence identity

    1. AT3G42170.1 [+] show detail - BED zinc finger ;hAT family dimerisation domain
      E-value: 1e-81; Score: 301.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam HAT dimerisation 0.0001
    HMMPanther BED FINGER-RELATED 4.1e-07

    See the detailed result >

    AT3G42170.1

    Model type
    Protein coding
    Short Description
    BED zinc finger ;hAT family dimerisation domain
    Curator Summary
    transposase-like gene with conserved domains from the family of hAT transposases that includes hobo from Drosophila melanogaster, Activator (Ac) from maize, and Tam3 from snapdragon but lacks several amino acids known to be essential for Ac transposition5. The DAYSLEEPER gene lacks 8 bp duplications and TIRs (a common feature of transcriptionally silent hAT transposases), however, DAYSLEEPER expression was detected, and several expressed sequence tags are available. The expression seems to be under the control of factors determining the circadian rhythm. DAYSLEEPER was isolated as a factor binding to a motif (Kubox1) present in the upstream region of the Arabidopsis DNA repair gene Ku70. Mutant plants lacking DAYSLEEPER or strongly overexpressing this gene do not develop in a normal manner.
    Computational Description
    BED zinc finger ;hAT family dimerisation domain; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656); BEST Arabidopsis thaliana protein match is: BED zinc finger ;hAT family dimerisation domain (TAIR:AT1G18560.1); Has 1233 Blast hits to 1128 proteins in 97 species: Archae - 0; Bacteria - 4; Metazoa - 232; Fungi - 219; Plants - 755; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR