K03023

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03023

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03023

Determination of introduced cDNA(s)

  • J023098I05 - Rice Full-length cDNAs - Original: J023098I05

    full reading [+] show sequence

    Nucleotide sequence: J023098I05 - full reading 
    GACCTTCCCC CTTGTCGGCG CGGACGCTCC CCCCACAAAA CCCTAGCGAA 
    ACCCCGCGGC GGCGGCGGAA GGGAGAGGAG ATAGATGGCG TCGGAGGAGG 
    AGACGAGCCG GCTTTTCCGC ATCCGCCGCA CGGTGATGCA GATGCTGCGG 
    GACAGGGGCT ACCTCGTGAC GGAGTTGGAC ATCGACCTCC CGAGGGGCGA 
    CTTCGTCGCA CGCTTCGGGG ATCCCGTCGA CCGCGACCAT CTCGTCTTCA 
    GCCGCCACAA GAAGGACAAC GGCGCCGACC AGATCTACGT CTTCTTCCCC 
    AAGGACGCGA AGCCCGGGGT GAAGACGATC AGGAGCTACG TGGAGAGGAT 
    GAAGCAGGAG AGCGTGTTCA ACGGCATCCT CGTCGTGCAG CAGGCGCTCA 
    GCGCGTTCGC CCGCAGCGCC GTGCAGGAGG TCTCCCAGAA GTTCCACCTC 
    GAGGTCTTCC AGGAAGCGGA ACTGCTTGTG AACATTAAGG ATCATACCCT 
    TGTGCCAGAG CACGAGCTCC TGACGCCTGA GCAGAAGAAG ACGCTGCTGG 
    AGCGGTATAC CGTGAAAGAG ACTCAGGTCT GGAAATAGAC ATTTTTTATT 
    TTCTCATAGG TGTAGTATTT GAATTGATTT GAGCATAATG TCATCGATGT 
    TTCATTCATG TGTTGATATC TGCACAACAG TAAAAGGTTT TGTGGGCAGC 
    ATTTTTGGAC AACTATTGGT GAATCATGAC AATTTTCCAG GAGGCTTGCA 
    TACATACGTA TTGTTTGTGT CGCCATTAAA CATGTCACAT ATTTCCTGAT 
    ACTTATCATA GCCTCATAGG AAATAGACTA GTGACTAGTA ATTACTAGTA 
    GCCTCATAGG AAAGTATGAG GCTATGAGGA AATAGCCTCA TAGCCTTGAT 
    ACTTTTCGAG ACATTGTGGC TTGTTTACAT AAACTCCCCT TCATTACCTG 
    TACTGCATTC GAAGTTTGGT ATCTGCTGCA CTCTAGTTAA CACATCGCAG 
    CTCAGGTAAC CTAACTCCTT GCTGTAAACC ATCTAATAAA CTAATAAATC 
    AACAGTTCTC TCTGACATTC AGTGCTGCAA ATGAATAAAA TTTGTTAGAA 
    TGAATATAAT TGATAGTAGT GGGGGCATAC ATTTTAAGTT TTAACCACAT 
    TCCCTGAATG CTCTTTTTAT CGATCTTTTT TTTCTAATTG TTAAGAGAAG 
    TAAATTCAGG TTTATGTGCT GTTGAACTTT GTCTGGCAGT GGAAACCAGG 
    GCTGTTCATA ATGTTGTTGT TGTTTTAAGT CATCTTGTTT TAGATACTGA 
    GCCTAACTCA GTTGGTCAAG TGTGTGAATG TAAGCCCAGA CCACCCAAGT 
    TCTTATTTAA AAATGCCACC TAGTTCCTCC TAGGTTGGTC GAGTTTTTTT 
    TAAAAAAAGT AATCTTGTTT TGTGAACTTT TAACTTATTG TTGTTTATTA 
    TGTCCTGTTT ACAATGCGAA CTTGCATTGT TCATGTTAGT TTTAAGATAA 
    CTGGTTCTAT AAAATGTGTT AGGTCATAGT TTAACAGAAC AAGGTGTCAA 
    GGTTTCTATA TCACTTCAGT AGACAATCAC GATAAATGAC AATCTGGTTC 
    TTGTTTTAGA GTCAAAGCTG CTAGTTGAGC AATGTGATAA TGCAGTTTTA 
    ATGTTATATG AGGTGGTAGC AGCATAACCT AATACAATAG GATATCAAGG 
    TTCTGTTTAT TTATATGCTT CGAATGCGAC ACTTTCAGAT CTTAACGCTG 
    ACGAGCTTGT CTTGTTACAA AGTTACCATG ATAAATACTC TAATGGCATT 
    GACTTACTCA GTTGCATGTG ATTCTTTACT ATGGCATGTG TCATGTTGGA 
    TAATGGGAAG AATATAAGGC ACCCGATGTG CTGGGGATGT TGATCTGAGA 
    AGCTCTTTGT TTTCATGTTC TAACATTCTA TTTCTTTGTT AATTTGCAAT 
    CTGTTTAGTT TGATACATAA TTTCTGAAGG GAATAGAAGA AATTCAATGA 
    GTACCAGTCA CCTCTGTTTC CTTTTTACGT TTTTTACATC CCCCAATTTT 
    GACACCTCAT TCTAAAATAT AAGTGTCTTC GCAATTATCA AGATAACTTC 
    AAACCTTATT AGATAACTAA TTGAATGGAC TCCACATGCA GATGTTTCTG 
    TAAACTTTAC TGCAGTAGCA CATTCTGTTC TGATGACATT GAATTTGTAT 
    TATGAATGCA GCTCCCCCGG ATTCAAATTA CGGACCCAAT AGCAAGATAT 
    TACGGCATGA AGCGTGGGCA AGTTGTAAAG ATCATCCGTG CTAGTGAGAC 
    CGCTGGAAGA TATGTGACGT ACCGTTATGT GGTGTGATCT TCACTACATT 
    TCACGCTTGG CCTATGCGAC GAATATTACC AGTGAAAATC ACTCTGTTGC 
    TAATTCATTT CCTGTAGTAG AAACACTCGT CAGCAAGTAA CAGAAGTGCT 
    GGGGTGCCTT GTTTCTCTTT GTTGAGCTTG TTTGGCATAG CGGTGTTAGC 
    ACTAGACGTA GGTTTCTGTA TCCGTGTTCC ATTTCACCCT ACCAAATCAT 
    TTGTGGCTAT CAGAAATGTG TTTGATTGGG TGGGTCTATT TCATCTTTCG 
    TGCCTGCCTG TATGATGTTT GTTTGATTGA AAATGGCATA AGAATGCCTT 
    CCGGGACC

    Gene models with high sequence identity

    1. AT3G22320.1 [+] show detail - Eukaryotic rpb5 RNA polymerase subunit family protein
      E-value: 3e-50; Score: 197.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR DNA-directed RNA polymerase, RPB5 subunit 4.20003460493095e-77
    Gene3D RNA polymerase, subunit H/Rpb5 C-terminal 0.000360000038700736
    Gene3D RNA polymerase, Rpb5, N-terminal 4.39999001237694e-42
    HMMPfam RNA polymerase, subunit H/Rpb5 C-terminal 1.5e-08
    superfamily RNA polymerase, Rpb5, N-terminal 1.4e-40
    HMMPfam RNA polymerase, Rpb5, N-terminal 2.90000000000001e-26
    superfamily RNA polymerase, subunit H/Rpb5 C-terminal 2.1e-07
    HMMPanther PTHR10535 5.79999653854781e-57
    BlastProDom RNA polymerase, subunit H/Rpb5 C-terminal 0

    See the detailed result >

    AT3G22320.1

    Model type
    Protein coding
    Short Description
    Eukaryotic rpb5 RNA polymerase subunit family protein
    Curator Summary
    Non-catalytic subunit common to DNA-dependent RNA polymerases I, II, III and IV; homologous to budding yeast RPB5.
    Computational Description
    NRPB5; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381), RNA polymerase, subunit H/Rpb5, conserved site (InterPro:IPR020608); BEST Arabidopsis thaliana protein match is: RNA polymerase II fifth largest subunit, C (TAIR:AT5G57980.1); Has 1046 Blast hits to 1046 proteins in 368 species: Archae - 260; Bacteria - 0; Metazoa - 162; Fungi - 216; Plants - 118; Viruses - 20; Other Eukaryotes - 270 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR