K03142

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03142

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03142

Determination of introduced cDNA(s)

  • J023138H21 - Rice Full-length cDNAs - Original: J023138H21

    full reading [+] show sequence

    Nucleotide sequence: J023138H21 - full reading 
    GCACTCACCC ACATCACACG CTGCGACGAC AGCATTGCGA GCTATAGCTA 
    AGCTAGTAGC TGCAATGGCG GTTCGCTACG AGAAGAAGGC GATGTGCGCG 
    CTGCTGCTCT CGCTGATCAT GGTGGCGCTC TCGGTGGCCG CCGCCGGCGA 
    CGGCGACGCG CCGCCGTCCA CGCCGGTGTC GCCGACGACG GCTTGCAACG 
    ACACGACGGA CCCCAGCTTC TGCCGGACCG TGCTGCCGCC GCGCGGGTCC 
    AGCGACCTCT ACACCTACGG CCGCTTCTCG GTGGCCCGGT CGCTGGACTC 
    CGCCCGGAGG TTCGCCGGCC TCGTCGGCCG CTACCTCGCC CGCCACCGCG 
    GCCTGTCGCC GGCGGCCGTC GGCGCGCTGC GCGACTGCCA GCTCATGTCG 
    GAGCTCAACG TCGACTTCCT CTCCGCCGCC GGCGCCACGC TGAGGAGCGC 
    CGCCGACGCG CTGCCCGACC CGCAGGCCGA CGACGTGCAC ACGCTGCTGT 
    CGGCGATCCT CACCAACCAG CAGACCTGCC TCGACGGCCT CCAGGCCGCG 
    TCGTCGTCGT GGTCGGAGCG CGGCGGCGGC GGCCTCGCCG CGCCCATCGC 
    CAACGGCACC AAGCTCTACA GCCTCTCGCT CTCCCTCTTC ACCAGGGCGT 
    GGGTGCCCAC GGCGAAGGGG TCCAAGCACC ACGGCGGCGG CAAGAAGCCT 
    CACCAAGGCC ACGGCAAGAA GCAGCCGCCG GCGGCGGCGG CGAGCATGAG 
    GAGGGGGCTG TTCGACGCGG CCGACGGCGA GATGGCGCGG CGGGTGGCGA 
    TGGAGGGGCC GGAGGCGACG GTGGCGGTGA ACGGGGTGGT GACGGTGGAC 
    CAGGGCGGCG GCGGGAACTA CACGACGGTG GGTGACGCGG TGGCGGCGGC 
    GCCGAGCAAC CTGGACGGCA GCACGGGGCA CTACGTGATC TACGTGGCGG 
    GCGGCGTGTA CGAGGAGAAC GTGGTGGTGC CCAAGCACAA GAGGTACATC 
    ATGATGGTCG GCGACGGCGT CGGCCAGACG GTCATCACCG GCAACCGGAG 
    CGTCGTCGAT GGCTGGACCA CTTTTAACTC CGCCACCTTC GCTGTGGTGG 
    GGCAAGGGTT CGTGGCGATG AACATGACGT TCCGGAACAC GGCGGGGCCG 
    TCGAAGCACC AGGCGGTGGC GCTCCGGTCC GGCGCCGACC TGTCGGCGTT 
    CTACGGGTGC AGCTTCGAGG CGTACCAGGA CACCCTCTAC GCCCACTCCC 
    TCCGCCAGTT CTACCGCCGC TGCGACGTCT ACGGCACCGT CGACTACGTC 
    TTCGGCAACG CCGCTGTCGT CTTCCAGTCC TGCGCCTTCC TCTCCCGCCT 
    CCCGCTCCCC GGCCAGTGCA ACACCGTCAC GGCGCAGGGC CGATCCGACC 
    CCAACCAGAA CACCGGCACC TCCATCCAGG GCTGCTCCCT CCTCGCCGCC 
    CCGGACCTCG CCGCCGCCGG CGACGGCGGC CGGACGCTCA CCTACCTCGG 
    CCGGCCGTGG AAGAACTTCT CCAGGACGGT GGTCATGGAG TCCTACGTCG 
    GCGGCCTCGT CGACCCGGCC GGGTGGATGC CGTGGTCCGG CGACTTCGCG 
    CTCGACACGC TCTTCTACGC CGAGTACAAC AACTCCGGCC CCGGCGCCGA 
    CACCAGCCGC CGCGTCGCCT GGCCGGGCTA CCACGTCCTC GGCGCCGGCG 
    CCGACGCCGG CAACTTCACC GTCACCAGCA TGGTGCTCGG CGACAACTGG 
    CTGCCCCAGA CCGGCGTCCC CTTCACCAGC GGCTTCCTCA CTTCCGATCC 
    ACCTATTAGC TAATGCATTA TTTAATTAAT TATATATATG ATCATCTAAA 
    CCCATCTATT AATAATTAAT TAATTATAGA ATGACAAACA CATAATGTAC 
    TACTACTATT CGATCGATCT CGGTGTCGGC ATTATTAGTT AGTTTACTTC 
    TTATTTATTA GTT

    Gene models with high sequence identity

    1. AT4G02330.1 [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
      E-value: 7e-158; Score: 554.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Pectin lyase fold/virulence factor 5.9e-111
    superfamily Pectinesterase inhibitor 4.4e-09
    HMMSmart Pectinesterase inhibitor 5.4e-20
    Gene3D Pectinesterase inhibitor 3.1e-06
    Gene3D Pectin lyase fold 1e-118
    PatternScan Pectinesterase, active site 0
    HMMPfam Pectinesterase, catalytic 1.8e-130
    HMMPfam Pectinesterase inhibitor 4.2e-25
    FPrintScan PRICHEXTENSN 2e-09
    FPrintScan PRICHEXTENSN 2e-09
    FPrintScan PRICHEXTENSN 2e-09
    FPrintScan PRICHEXTENSN 2e-09
    FPrintScan PRICHEXTENSN 2e-09
    HMMTigr Pectinesterase inhibitor 0.00018

    See the detailed result >

    AT4G02330.1

    Model type
    Protein coding
    Short Description
    Plant invertase/pectin methylesterase inhibitor superfamily
    Computational Description
    ATPMEPCRB; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system, cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT1G02810.1); Has 2755 Blast hits to 2700 proteins in 321 species: Archae - 8; Bacteria - 597; Metazoa - 1; Fungi - 199; Plants - 1923; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR