K03242

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03242

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K03242

Determination of introduced cDNA(s)

  • J013027L08 - Rice Full-length cDNAs - Original: J013027L08

    full reading [+] show sequence

    Nucleotide sequence: J013027L08 - full reading 
    GTAGAAAAAA AACAGAGGGG TAGCAGAGGA GCAACCAATC GCGAGAGAGA 
    AGGAAGGTTG AGGAAGAGGA GGAGGAGGAG GAGGAAGAAG AAGACGAGAT 
    GGAGAGAGAT GAGGTGTGCT GTTCTTGCGC CATGAGGCAG TGCAGGATCT 
    GCCATGAGGA GGAGGAGGAA GGGTGCACCG CCATGGAGTC CCCCTGCGGA 
    TGCTCTGGCT CCCTCAAGTA CGCGCACAGG GGGTGTGTGC AGAGATGGTG 
    CGATGAGAAG GGGAGCACGC TCTGCGAGAT TTCCCTTCAG AATTTCGAAC 
    CAGGCTACAC TGCTCCTCCC AAGAAAGCTC AACCTGCCCA TGTCGCAGTG 
    ACCATCAGAG AGAGCCTTGA GGTTCCCAGG CCAAGCTACG AGCCGGAGGA 
    CACGCCGTTG ATCGGCGAGC AGGATTACGC CGAGTGCGCC GGAGCGGCCG 
    GCAGGAGCGC CACCTGGTGC AGATCGGTGG CCGTCACGTT CACGGCTGTT 
    CTGCTGCTGA GGCATCTCGT CGCTGTCGTG ACGGTCGGAG CTGCACACCA 
    GTACGCCTTC AGCCTCTTGA CGATATACTT GCTCCGGGCT AGTGGAATCT 
    TGCTGCCGTT CTACGTCGTC ATGAGGCTCA TCTCCACGGT TCAGAAGGGT 
    CAGAGGCAAT ACCAGCTGCA GCTGCTCCAG GAGCAAAGGA GAAATGCAGC 
    TAGAATGCAC AGGTTGCATG GTCAAGAAGA ACAAAATCAA CATGCCATTC 
    TTGTCCGGTG AACAAAGAAT GAAGTGGTTC TCCTGTAGAA AAGACTGCAA 
    AATTGTATTA TTACTGATGG GAAAAGGAAA ATAAACATTG TTCATAAGCT 
    TTCCACTATA TGTACATGTC CACATTTGTT GCAAAGATGA TTACACCAGA 
    GCTTTGAGTA CT

    Gene models with high sequence identity

    1. AT1G02610.1 [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
      E-value: 1e-34; Score: 143.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Gene3D no description 2.7e-08
    HMMPfam Protein of unknown function DUF3675 3.6e-35
    HMMPfam Zinc finger, C3HC4 RING-type 5.1e-06
    HMMSmart Zinc finger, RING-CH-type 4.6e-17
    HMMPanther MEMBRANE ASSOCIATED RING FINGER 1,8 7.7e-11
    HMMPanther MEMBRANE ASSOCIATED RING FINGER 7.7e-11
    ProfileScan Zinc finger, RING-CH-type 19.663

    See the detailed result >

    AT1G02610.1

    Model type
    Protein coding
    Short Description
    RING/FYVE/PHD zinc finger superfamily protein
    Computational Description
    RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT4G02075.1); Has 1637 Blast hits to 1605 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 761; Fungi - 107; Plants - 616; Viruses - 18; Other Eukaryotes - 135 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR