K03417

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03417

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03417

Determination of introduced cDNA(s)

  • J033131K22 - Rice Full-length cDNAs - Original: J033131K22

    full reading [+] show sequence

    Nucleotide sequence: J033131K22 - full reading 
    GGAGTGAAAA ATCAAACCCG CATATAGAGA GAGAGGAACA GCGAAAGACC 
    ACGCGTGCCA TCCCTCCACG CTTGTAGGGT TTCCGGATCG GAGGAGAGAG 
    CCCCCCACGC CGCCGCAGCC ATGGTTCGCG GATCGCTCGG GAAGCTGGCC 
    TCGCGCGCCC TCTCCGTCGC CGGGAAATGG CAGCACCAGC AGCTCCGCCG 
    CCTCAACATC CACGAGTACC AGGGCGCGGA GCTGATGGGG AAGTACGGGA 
    TCAACGTGCC CAGGGGCGCG GCGGCGGGAT CGGTGGAGGA GGTCAAAAAC 
    ACCTTGAAGA ACGTCTTCCC TAGTGAGAAA GAGATAGTTG TTAAGAGTCA 
    AATCCTGGCT GGTGGCCGTG GATTGGGAAC ATTCAAAAGT GGACTGCAGG 
    GTGGTGTTCA TATTGTTAAG GCAGAGGAAG CTGAAAGCCT CGCAGCAAAA 
    ATGCTTGGCC AGATTCTGGT AACAAAACAA ACTGGTCCAC AGGGGAAGAT 
    TGTGAGCAAG GTCTACTTAT GTGAGAAACT GTCACTTGTT AATGAGATGT 
    ACTTCGCCAT CACCCTTGAC AGGAATACTG CTAGTCCGCT CATTATAGCG 
    TGCAGCAAGG GAGGAACCAG TATTGAAGAT CTTGCAGAGA AGTACCCTGA 
    TATGATCATC AAGGTTCCTA TTGATGTATT CAAGGGAATC ACAGATGATG 
    ATGCAGCTAA AGTTGTTGAT GGTCTGGCAC CAAAGACAGC TGACAGACAG 
    TCTTCCATAG AACAGATTAA GAAGCTCTAT GAACTGTTCT GCAAGTCTGA 
    TTGCACACTG CTCGAGATTA ATCCTCTTGC TGAGACAGCT GACAACAAGC 
    TGGTCGCTGC TGATGCAAAG TTGAACTTTG ATGACAATGC TGCCTTTAGG 
    CAGAAAGAGA TATTTGCCAT GCGTGACACA ACACAGGAAG ATCCCAGAGA 
    GGTGGCTGCT GCCAAAGCTG ACTTGAACTA CATTGGGCTT GATGGAGAAA 
    TTGGCTGCAT GGTGAACGGT GCAGGATTGG CAATGGCTAC AATGGACATC 
    ATTAAGTTGC ATGGGGGTAC GCCTGCCAAT TTTCTTGATG TTGGTGGAAG 
    TGCATCAGAG GGACAGGTTG TGGAAGCATT TAAGATTTTG ACTTCCGATG 
    ATAGAGTGAA GGCTATTCTA GTGAACATTT TTGGTGGTAT CATGAAATGT 
    GATGTGATAG CAAGTGGAAT AGTGAATGCA GCAAAACAGG TTGACCTGAA 
    GGTGCCTGTT GTTGTTCGGT TGGAAGGCAC CAATGTTGAC CAAGGGAAGA 
    GGATTCTAAA GGAAAGTGGA ATGACCTTAA TCACTGCAGA GGATCTTGAT 
    GATGCGGCTG AGAAAGCTGT AAAAGCATCT GTCAAATAAT TAACTATTTG 
    TAGTATACCA ACATCAAGTT TATTTTTTGC TGGCACAAGA TGAGCGGTGC 
    TCATGACATA TTTCAGGGGT CTGAAGTTGG GAACCCCAAA TCCTTTTGAA 
    GTGGAATTAT TTTGGCTTGA TTTCCCCTAG AAACATTTTG GTCTACTGTT 
    AATAAACCTC TGTCGGCACC AAACTGAGCA ACCACTTCTT TTTGCCAAAG 
    TTAAAGTGGA GTTTATCTGT TTTTGCCTTG AGCAAGAGAG TACGGCTTTA 
    CACTTTGCAT ATGCGCGATA ACTGATTGTA AAGTCTGTAA CATCTTGGCT 
    ATAGGTTATG ATGACGTGTT ATGATC

    Gene models with high sequence identity

    1. AT2G20420.1 [+] show detail - ATP citrate lyase (ACL) family protein
      E-value: 0; Score: 701.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam ATP-grasp fold, succinyl-CoA synthetase-type 1.9e-60
    HMMPfam ATP-citrate lyase/succinyl-CoA ligase 1.2e-27
    superfamily Glutathione synthetase ATP-binding domain-lik 8e-61
    superfamily Succinyl-CoA synthetase-like 8.1e-53
    ProfileScan ATP-grasp fold 10.093
    Gene3D ATP-grasp fold, subdomain 2 9.2e-49
    Gene3D Succinyl-CoA synthetase-like 2.7e-60
    HMMTigr Succinyl-CoA synthetase, beta subunit 2.7e-169
    HMMPanther Succinyl-CoA synthetase, beta subunit 4.4e-230
    PatternScan Succinyl-CoA synthetase, beta subunit, conserved site 0

    See the detailed result >

    AT2G20420.1

    Model type
    Protein coding
    Short Description
    ATP citrate lyase (ACL) family protein
    Computational Description
    ATP citrate lyase (ACL) family protein; FUNCTIONS IN: succinate-CoA ligase (GDP-forming) activity, copper ion binding, ATP binding; INVOLVED IN: response to cadmium ion, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA synthetase, beta subunit (InterPro:IPR005809), Succinyl-CoA synthetase, beta subunit, conserved site (InterPro:IPR017866), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-1 (TAIR:AT1G10670.4); Has 9337 Blast hits to 9333 proteins in 2108 species: Archae - 181; Bacteria - 4147; Metazoa - 466; Fungi - 228; Plants - 81; Viruses - 0; Other Eukaryotes - 4234 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR