K04004

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04004

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04004

Determination of introduced cDNA(s)

  • J033084E07 - Rice Full-length cDNAs - Original: J033084E07

    full reading [+] show sequence

    Nucleotide sequence: J033084E07 - full reading 
    GAGTCCTGAT GAGTCTCTCT CTACTCTCTC TCCTGCCGCC TCGCCAAAAC 
    GGAAACGAGA GGGCTGAGGG CTCCATGGAG ATCGCGGTTT CGATGTCGGC 
    GAGGCGCCGT GAACTCGCAG CCGGCGGTGG CAGGCCAGCC GTTGGGCGTG 
    AAGGAACAGT AGCGGGCTAA TATCCGGCCA CAAGACGGCG ACCGCCGCCG 
    GGGGAGTGCC GCTTGGTGGC GGTGCGCGCC ACCCGTTCGG CGGAATGCCC 
    AGCGGGACTT CGCCACGGAC GGGCGGCTCG CCGCACGCCG CTTCAGTCGA 
    TCGCGAGCAC GATCCACACC TCGAGGATTT GTAAGTGACC CAATCTGTAC 
    GGGATTCCAA CTAATTCAGA ATTCAAGTCC GACGGGGGCG GAGTGCACGG 
    GGACCTCACC ATCACTGCAG CGAGGATCCC TCTTGTTGCG TCTGCTATCG 
    ATTCTTCGAT TTATGAGGTG TTATGTGCGC AAGTACATGC AACTATGGAC 
    AAAATTGGAA CCGAGCTACG ATTACACATG AGACGGACGA CAACCACTCT 
    TGCACTGCGT AAGGAGGTTG AAGTTGATGG ACCGTGGACC GCTGTTGATA 
    TTGTTAGCGA CATCAGGCAT GTCGACCACA CATCTGTTGG TCATGCTGCT 
    GCTGCTGTTG CACTTCTGTG GTTGGCCAAA CTCTATGTTT GCAGTCATTC 
    TATCCATGTT TGGGAGTGTG AAGGATGATG CATTGAAAAC CATGGATGCA 
    ATGTCAATCC CAGCTGTAAT ATCAAGTGGG ATTGCTGAGA GGATACCCAT 
    GGTCTGATGC TCTGCAACCG GTGAGGGTAG AGGTACAGAT GCATCTGGCC 
    TGCTGTTGCT GTCAATCATG CTGAGTGGGT TGTGGCATGA AGGAACTGTT 
    GAAGGTAAGT AGCTACTTCC GGTGAACTGG ATGGTGGAGG AGATGGCATC 
    GGTCATTACT GATGATGTGT TATCTGAGGT ATGCTGACTT CTCTGTGTGG 
    TCTGCGAGAC AGGGGCAGTG TAGGCTTCAT TTGTGCTGGA CAAGGGAGGA 
    GATACCCATG AGTGTGAGAG CGCTCTTTGT GCCGTGGAAT TGGTTTTCTT 
    GAAAATCCTG CAGATTGCCC AGGAATCCTG CTCATGATAA GAAAAAAGAA 
    GAATAAGATT AGGGCAGTGT TTTCAGGTAA AAAGTGCATT CAACTTATCT 
    TCACAAGGAA ATGGTATATG AAATTGTTGG TGTCATACTG AATTAGCTCG 
    GAAAGCACTA CATATGCTAG GCCTTTTGCA GTTTATATTG CAAGTTTTCC 
    CATTGTAATT ATGGGCAGAC ATGTATTGCT CAGATCATCT ACCTTAGTGC 
    CAGTTTTGGT AGCTATGCCT AAGCTACTTT TGTAGCATAT GTGTTAAGGT 
    TTGAAGTTTT TGTTTTCAAA TGTTGCAGCA TGCCAGTTGC TTACATTTGG 
    TGGAATGATC TTCTCGAGTG GCTTCTTCTG TGGCAATGAA GGGTCAGTGA 
    GCGATGGCAG CCGGAACTCG TGCATCATCC AGTCAGTTTT GACGCCTTTA 
    GCTGCTCTGC CCTTGTAGAA GACAAGGGAC TTCTTCAAGC CTATGCACTT 
    TGATCCATCG GAGGAGTAGA TTGGCCTATC GGTTCCAGTG GCCTTCCAGA 
    AACCTGCTCC AGTCACCCTG TTTGGCCTTG TGCTGTTCCG GTACTTCCTA 
    TCCCTTGGGC AGT

    Gene models with high sequence identity

    1. AT1G26870.1 [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
      E-value: 2e-40; Score: 164.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan No apical meristem (NAM) protein 29.355
    HMMPfam No apical meristem (NAM) protein 1.9e-25
    superfamily No apical meristem (NAM) protein 6.3e-26

    See the detailed result >

    AT1G26870.1

    Model type
    Protein coding
    Short Description
    NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
    Computational Description
    FEZ (FEZ); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 94 (TAIR:AT5G39820.1); Has 2973 Blast hits to 2966 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2971; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR