K04005

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04005

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04005

Determination of introduced cDNA(s)

  • J023104H08 - Rice Full-length cDNAs - Original: J023104H08

    full reading [+] show sequence

    Nucleotide sequence: J023104H08 - full reading 
    ACTGTACGCT AAGCTTGAAG GGCTGCCCAT CCATCAAGAT AAACCAGATG 
    CAGTGCCAGC TGGATTCTTA TCTTCTTTGC TCGGCGCTGG ATGTGAGTGC 
    CATGGATACA ATATTGAAAT CGTTGGGCAT TCTTTAGGAG GTTCTGTAGC 
    TGCACTTCTT GGTATCAGAC TGTATGGACG CTTTCCAAAA TTACATGTAT 
    ATGCATATGG AGCAGCACCA TGTGTGGACT ATGTGATCGC AGAAGCATGT 
    TCACAGTTTG TTACCAGTAT TGTCCACAAT GATGAATTTT CTGCCCGGTT 
    ATCCATGAAT TCAATAATTA GATTACGTGC TGCTGCTGTG AGAGCTCTCT 
    CAAAGGATGC TTTGCCGAAT TCCGCCAAAG TTGGAAAACT AGTTGCTGGG 
    ATCGTGAGGA CGAAGGGATA CAATCGAAAT GTTGCAGATC ATCGTCAGTC 
    TACTGGTGCT CTTCAGATAG TCAATGAGGC AAAGCTAAGA AATGATCAAA 
    TCCACGGAAA TAATCTAATG CACACAATTA GAGGTGGTGT ATTCCTCCTT 
    GGTAAAGCGA TATCTTGCTT GGTAAATACT CCAAAATATC GAGTGAGCTC 
    CACAGCAGCA ATCAACTATG AGTTGGGGAG CAGATCTAGA ATGAATATTC 
    TTGGTGATAG AGGGAACTGC ATGGCTGCTT CCTGCAGTGT TCTGGATGTT 
    CCTCATTTTG GAGAACCTAG TAATGCATGC GGAAATGGGA AGTCTTCTGA 
    AGATGATCTG AATGAATGTA GCAGGGAATA CAGGCTACCT CATTCAAATG 
    ATGGCACAAA ACTCTCGATT GATCCTAATG ATCTGCGTAC AATAAGTTTG 
    CCTGAAGGAC AATCACCGGA GGTGTATCTG CCTGGTCTCG TTATTCATCT 
    TGTTCCAGTA AAGAATCATA CCTCTCCATT TCAGAAGACA CCTGTGACTC 
    GACACAAGAG TCGCAAGAAC AAGAGTTACA AAGCATTTAT AGCCAATCGA 
    CAAGATTTTA TGGACCTTGT TGTTACACCT CGTATGTTCC TTGATCATCT 
    TCCATGGAGG TGCCACTATG CCATGCAAAG GGTTATAGAA ACTCGGAAAA 
    GGGCATGCTA ATTCATGATT CGTCCACCAG AGATGATACT GTGTGAAGTT 
    AATTTTGCAA CTCTCCTTAA TTCTTGTAGA TAAGTTCAGG ATGTTAGGAT 
    CATCTGCTTC TTGCAGGAGG TTGGCTGCAT ATACAGTGTT GACTGTATTA 
    CTGTAACTGT AAGTAGAACA GTTCAGAGCT GAAGGGTGTT GCCAATGTGA 
    AAAACATCAC TTGGACCTTA GCATTTGTTG TACTAGGAGT ATCTAGCTTT 
    ACATAGGCTT GCTCTGAGGT CAAAGTAGAG TACAGCATGC CACTATTATT 
    TATGAAACCT TTGGTAGTGA GTAATTATAT TAGTCTGTAG CATCAAATTT 
    TGCTGCAATG TTGTTGTAAC TCTAGTGTTC ACACATTACA TGTAATTGTC 
    TGAACAATCA TGTACCATGT ACTCCTACTT GCTGAATAAA GAAACTAGTT 
    TCTGCAGCGA AGAAAAGCTG TCCCCC

    Gene models with high sequence identity

    1. AT1G05790.2 [+] show detail - lipase class 3 family protein
      E-value: 1e-33; Score: 141.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.6e-11
    superfamily alpha/beta-Hydrolases 1.7e-18
    HMMPanther gb def: T20M3.5 protein 3.1e-56
    HMMPanther CGI-141-RELATED/LIPASE CONTAINING PROTEIN 3.1e-56
    HMMPfam Lipase, class 3 8.9e-09

    See the detailed result >

    AT1G05790.2

    Model type
    Protein coding
    Short Description
    lipase class 3 family protein
    Computational Description
    lipase class 3 family protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G42450.1); Has 496 Blast hits to 490 proteins in 108 species: Archae - 0; Bacteria - 1; Metazoa - 175; Fungi - 34; Plants - 192; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR