K04015

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04015

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04015

Determination of introduced cDNA(s)

  • J033021F14 - Rice Full-length cDNAs - Original: J033021F14

    full reading [+] show sequence

    Nucleotide sequence: J033021F14 - full reading 
    GGCGAACTCT CCACGCCTCC ACAAATAAAG CTCGTCCCGA GGAAGGGCGG 
    CGACCCACCC CCCCCAATCG CCAAAACCCT AACTCCGATC CGATCGAGCT 
    CTGCTTCCCA TGGCGACTGC CGCGAGCCAG GCGAGCCTCC TGCTCCAGAA 
    GCAGCTCAAA GATCTCGCGA AGAACCCCGT GGATGGGTTC TCGGCGGGGC 
    TTGTGGACGA TAGCAACGTG TTCGAGTGGC AGGTCACCAT CATCGGCCCG 
    CCCGATACCC TGTATGATGG AGGCTACTTC AATGCAATAA TGACCTTCCC 
    CCAGAATTAT CCGAATAGTC CCCCATCAGT AAGGTTTACC TCTGAGATGT 
    GGCATCCAAA TGTTTATCCT GATGGGCGCG TATGCATTTC TATCCTTCAT 
    CCACCTGGCG AAGATCCCAA CGGTTATGAG CTTGCGAGCG AACGGTGGAC 
    ACCTGTGCAT ACAGTTGAAA GTATAGTTCT GAGCATCATT TCGATGCTCT 
    CTAGTCCAAA TGATGAGTCT CCAGCAAATA TTGAAGCGGC TAAGGATTGG 
    AGAGAAAAGA GGGACGATTT CAAGAAAAAG GTTAGACGCA TTGTTCGTAA 
    ATCACAGGAA ATGCTCTGAA AGATAAGGAG CACAAGGGGG AGTAAGCGAG 
    TGCTACAACA GGTGCACTAC ACTTAACTGT CTGTCGTCAA ACGACTACCT 
    AAAGATAGCA TTTTTGCTTC TTCCCCTGTA TATTTCCCCC TCAGTGTCAT 
    TCGAGTGGTG ATGTTGGTCT TGTCTCCGAG ATGCTCGGAA ATGTTGCCTA 
    TTCTAGAAAT TTCGATTGTA TTGTGTGGCA TGGAGTGTCA ACGTTGAGGA 
    ATATTTTGGA ATGCTGCCAA TTAGTCATAA TTGTCGTAAT GAACTTTTCA 
    TAACAGAAAA CCTAGTTTCA CATATCTGTT GGCTTACTGC AGCAGCCCGG 
    AATGCCATCT CGTTGTGAGT ATATAACTCT GATTTGTTTG AGTATTGTTT 
    ATGGCCGCAA AAGGATGGTT TTAGGCTTGT AGCATGTCTA CTCTGACTTT 
    CATATTCTTC CTGTACCTGT ACGTTGCCAA TCATATGGAA ATCAAGCTGG 
    CAGCAATCTG GTTATCTTTT CAGCC

    Gene models with high sequence identity

    1. AT5G59300.1 [+] show detail - ubiquitin carrier protein 7
      E-value: 1e-69; Score: 260.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ubiquitin-conjugating enzyme, E2 8e-52
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 G 3e-108
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 3e-108
    HMMSmart Ubiquitin-conjugating enzyme, E2 2.6e-72
    superfamily Ubiquitin-conjugating enzyme/RWD-like 9.4e-64
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 1e-58
    ProfileScan Ubiquitin-conjugating enzyme, E2 41.967
    PatternScan Ubiquitin-conjugating enzyme, E2 0

    See the detailed result >

    AT5G59300.1

    Model type
    Protein coding
    Short Description
    ubiquitin carrier protein 7
    Curator Summary
    ubiquitin conjugating enzyme E2
    Computational Description
    ubiquitin carrier protein 7 (UBC7); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 13 (TAIR:AT3G46460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR