K04039

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04039

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04039

Determination of introduced cDNA(s)

J033128L17 - Rice Full-length cDNAs - Original: J033128L17

full reading [+] show sequence

GAAATCTCCC TCACCACAGG GCACGATACC GCCGTCCGTT CGCGGCGCGA 
CCCTTCGCCG CCGCGCCGCC GCGCCGGCGC TATGCAGCGC CTCCAAAAGC 
AGCTCCTTCC CGCCCTGCGC GCCGCCTTCC CTCTCCCTGC CTCCCACTTC 
AGCAGCCGCC TTCTCTCCGC CTCCACCGCC ACCTTATCCC CCACCCGCTT 
CGTCGACGAG GACGCCCTCG TCGCCGCCTG CGGCCTCACC GGAGCCGAAG 
CCCTCAAGGC CTCGAAGCGT CTACAGAAGG TACCCTCAAA TCTAGACGCC 
GCCCTCACCT TCCTCGCCTT TCTCGCCGAC TTCCGCCTCT CCAAAGACGA 
CATCGCCGCC GCAAGCTCAC GGTACCCGCG GTTCCTCCAT CTCAAGGTGG 
ACGAAACCCT AACCTCCCAA GTAGCCCGGC TCCGGGATAT CGGCCTATCC 
ACTCCCGAGA TTGGCCGCCT CATTACCATC GCCCCCTGCA TCCTCTCCAA 
TCCTCGCACG ATCTCCCGCC TTGAATTCTA CCTCTCCTTT TTGGGCTCCT 
ACCCCAGGGT GCACTCCGCC CTTCGGAACA ATTCCTCCCT TCTACGGCGA 
AACAACATCG AGAGTGAGGT CAAGCCCAAC ATTGCATTCC TGGAGCAGTG 
CGGCCTAACT ACTTGTGATA TTGCCAAGAT CCTCATGTCT GGCTCTAGGA 
TACTCATTAT GCAGCCAGAG CATGTCAAGG AAATTGTGGC GTGTGCAGAC 
AAGTTCGGTA TGCCCCGTGA GTCAGCTGGT TTCAGGTATG CCCTGATGGC 
TGTTACCGGC ATCAGCCCAG TGAGGGTCAG CGCAAACTTG ATTTCTTGAG 
GATGGTTATT GGATGCTCAG ATGCCCAGCT ACACATTGCG GTGTCTAGGT 
TTCCACTAAT CCTGACATAC TCAGAAGTTA AGCTGAGCCG CTCACTGGAA 
TTCCTGAAAG CGGAGGTTGG GTTGGAGCCT CAGTACATTG TGCTCCGGCC 
AGCATTGCTC GGCTATAGCA TTCAGAAACG GCTGATGCCG CGTTATCATG 
TCATGAAGGT TCTGAATGAA AAGGGCCTGC TGAAGAAAGA CACTGATTTT 
TACTCTATGG TTAAAATAGT TGAAGAGAGC TTTTTTAAGA AGTTCCTTCT 
CCCATACCAC AGGTCTGTTC CAGGACTTGA AAAAGCTTAT CTGGCTGCCC 
GTGAAGGGAA AATGTTTCCT GAAATCTAAA ACAGAGATGC TGGAGGTTTA 
TTCTGCCTAG GAACTTGATA ATGTTCTGCA TTTTACATCT TGCTCAGTTC 
TTAGATGATT TCTAGCGATC TGTATTTGTG ATTTCATCTG TGCTTTTTGA 
GACAAACATC TAATTTTAGT GCACTCTTGT TCTCATTTT

Gene models with high sequence identity

AT5G64950.1 [+] show detail - Mitochondrial transcription termination factor family protein
E-value: 4e-17; Score: 36.20

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Mitochodrial transcription termination factor-related	4.8e-09
HMMPfam	Mitochodrial transcription termination factor-related	1.5e-15
HMMSmart	Mitochodrial transcription termination factor-related	0.048
HMMSmart	Mitochodrial transcription termination factor-related	11

See the detailed result >

AT5G64950.1

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT5G07900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR