K04129

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04129

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04129

Determination of introduced cDNA(s)

  • J023016I01 - Rice Full-length cDNAs - Original: J023016I01

    full reading [+] show sequence

    Nucleotide sequence: J023016I01 - full reading 
    GACCCGCCCA AACCCATCCT CCGCCGCCAA CGCGCCGAGA GCAAAAAAAG 
    AGAAGCACCG GGATGCTGTA CATCGTGGGG CTCGGCCTCG GCGACGAGCG 
    CGACATCACC GTGCGGGGGC TCGACGCCGT CCGCCGCTGC GCCAAGGTCT 
    ACATGGAGGC CTACACCTCC CTCCTTTCCC TCGGCCTCGA CCCCTCCGCG 
    CTCTCCAACC TCGAGAAGAT GTATGGGAAG GAGATCACGG TGGCGGACCG 
    CGAGATGGTG GAGGAGCGCG CCGACCAGAT GCTCCGCGAG GCCGCCGACG 
    CGGACGTCGC CTTCCTCGTC GTCGGCGACC CCTTCGGCGC AACTACACAC 
    ACTGATCTGG TGGTTCGCGC CAAGAACATG GGGGTGGAAG TGAAGGTGAT 
    CCACAATGCG TCCGTCATGA ATGCAGTTGG AGTTTGCGGA TTGCAACTTT 
    ACCGCTACGG GGAGACCATC TCTATACCTT TCTTCACGGA GACATGGAGG 
    CCGGACAGTT TCTATGAGAA GATTCAGAAC AATCGACGGC TTGGACTGCA 
    CACACTTTGC TTACTAGATA TTCGTGTTAA GGAACCAACG CTTGAGTCTT 
    TATGCAGGGG AAAGAAAGTG TCTGAACCAC CAAGGTTCAT GTCTGTAAAC 
    ACCGCAATAA GTCAGCTTTT GGAGGTGGAG GAACTGCGTG GGGGATCTGC 
    ATATGGCGCA GATTCACTAT GCATAGGTGT TGCTCGCCTT GGAAGTGATG 
    ATCAGAAGAT CGTCGCTGGA CCTATGAAGA AACTACTAGA TGTCGATTTC 
    GGCCCACCCC TTCACTGCCT TATCATAGTG GGAGAGACGC ATCCTGTGGA 
    AGAAGAGATG ATAGAATTCC ACATGATCAA GTCATGATGA ATGAAAGTGC 
    TTTTATGGCC TTGTAGCTGG ATACATGATC CCAGGCTTAT AGCTCCCTTG 
    AAACGATACT TCGATGCTTC CGCCCGCCGT GAAAGGTCCA CCAGTAGTAG 
    TTTACTGCTC CAATTGTTGC TCATTTTTAA GTTAAACTGG GATCAGCTGT 
    TGTTCTTTTT TTGGCCTGAT ACCGAATACT CTCAAACCAG TATTGAACCT 
    TGTTTACATT GTGTGAGCTC ATATTTGAAT GTGTTCGTGC ATAAACC

    Gene models with high sequence identity

    1. AT4G31790.2 [+] show detail - Tetrapyrrole (Corrin/Porphyrin) Methylases
      E-value: 2e-120; Score: 429.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Diphthine synthase 2e-98
    superfamily Tetrapyrrole methylase 1.4e-52
    Gene3D Tetrapyrrole methylase, subdomain 1 2.6e-41
    Gene3D Tetrapyrrole methylase, subdomain 2 3.6e-52
    HAMAP Diphthine synthase 27.952
    HMMPanther Diphthine synthase 3.1e-140
    HMMPIR Diphthine synthase 9.9e-165
    HMMPfam Tetrapyrrole methylase 2.6e-20

    See the detailed result >

    AT4G31790.2

    Model type
    Protein coding
    Short Description
    Tetrapyrrole (Corrin/Porphyrin) Methylases
    Computational Description
    Tetrapyrrole (Corrin/Porphyrin) Methylases; FUNCTIONS IN: methyltransferase activity, diphthine synthase activity; INVOLVED IN: peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diphthine synthase (InterPro:IPR004551), Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR