K04244

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04244

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04244

Determination of introduced cDNA(s)

  • J013089N03 - Rice Full-length cDNAs - Original: J013089N03

    full reading [+] show sequence

    Nucleotide sequence: J013089N03 - full reading 
    GGACGCCTCG TCTGAACACA AAACCCCGTA AAAATCTCCG CCTCCGCACC 
    GCCACCGTCG CCGTCGCCGT CATGATGGAC ACCGAGGGGA GCGAGATCCA 
    CATGGGGGAC CTCGGCGGCG CAGCCGCCGC CAAGGCGGAG GATGGAGAAA 
    TATGGACATT TAGCGTAAGA TCCTTTGAGG CACCTCCCCC AGAACGAACT 
    ATTCATGTGA ACTACGAAGG CTTCGCTGAA GATGTGAGAG TTGGTGATGA 
    GCTTCTTGTT GATGGTGGCA TGGCTCGGTT TGAGGTGGTT GAGAAATTAG 
    GACCAGATGT CAAGTGCCGT TGCACAGATC CTGGTTTGTT GCTGCCACGT 
    GCCAATCTTA CATTTTGGCG GGATGGTAGT ATTGTCCGTG AGAGGAACGC 
    TATGCTACCT ACCATTTCAT CAAAGGATTG GCTTGACATA GACTTTGGAA 
    TTTCTGAAGG CGTAGATTTT ATTGCAGTTT CGTTTGTCAA ATCTGCAGAA 
    GTAATTAACC ATCTGAAAAG CTATATAGCT GCAAGGAGCC GTGGCAGCGA 
    TATAGCAGTC ATTGCCAAGA TCGAGAGCAT TGACTCTTTG AAGAACTTGG 
    AGGAGATAAT CCGTGCTTCA GATGGTGCCA TGGTAGCCCG AGGGGATATG 
    GGTGCACAAA TTCCCTTGGA GCAAGTCCCC TCAGTACAAC AAAAGATAGT 
    TAAACTGTGC AGGCAGCTCA ACAAGCCAGT CATTGTTGCG TCGCAGCTTC 
    TTGAATCGAT GATTGAGTAT CCTACGCCCA CCAGGGCCGA GGTTGCTGAT 
    GTTTCTGAAG CAGTTCGTCA GCGTGCAGAT GCGCTTATGC TTTCAGGTGA 
    GTCAGCAATG GGGAGATATC CAGAGAAAGC TCTTAGTGTC CTCCGGAGTG 
    TTAGCCTAAG GATTGAGAAG TGGTGGAGAG AGGAGAAGCG CCATGAGGAA 
    CTGGAACTTA AAGATGTTTC ATCTTCCTTC TCTGACAAAA TATCAGAAGA 
    AATCTGCATT TCGGCCGCTA AAATGGCCAA CAAATTGGAG GTAGATGCCG 
    TTTTCGTCTA CACAAACACT GGCCACATGG CCTCACTGCT CTCGCGGTGC 
    CGTCCTGACT GCCCGATCTT CGCCTTCACG ACCTCGACAT CTGTGAGGAG 
    ACGATTGAAC CTCCAATGGG GCCTCATCCC TTTCCGCCTC AGCTTCTCGG 
    ACGACATGGA GAGCAACCTG AACCGTACCT TCTCGCTGCT CAAGGCCAGG 
    GGCATGATCC AGTCCGGCGA CCTTGTCATC GCGCTCTCCG ACATGCTGCA 
    GTCCATCCAG GTCATGAACG TACCTTGAGA ATCATCATGC TCCCCTCTCG 
    TGTTTGTTTG TTCTGCCCAA AACGGAACAC GGCTTTAGTT GACATCATCT 
    TAAGGGCGGT TTTCTGGTTT GAAATTTATT CGTTTGTTCT CCATTGTGTT 
    AGACGACAGA ACCAGAGAAT GTTACAACAA TAATGCTGCA ACTTCCAGCG 
    CGTTGTAAAC TCTATGCTAT TTAGCCTGAT GTATAAGGCC ATGAACTGTT 
    TTGTCGCTTA CTATGATAGG CTATGTATTT ACCAATAAAC CCTTCTATTT 
    AAGCTATGTA CGAATTTTCC TCATC

    Gene models with high sequence identity

    1. AT3G22960.1 [+] show detail - Pyruvate kinase family protein
      E-value: 0; Score: 663.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Pyruvate/Phosphoenolpyruvate kinase, catalytic core 2.9e-58
    superfamily Pyruvate kinase, C-terminal-like 2.9e-32
    superfamily Pyruvate kinase, beta-barrel-like 7.2e-13
    HMMPfam Pyruvate kinase, barrel 2.9e-73
    HMMPfam Pyruvate kinase, alpha/beta 8.7e-24
    PatternScan Pyruvate kinase, active site 0
    Gene3D Pyruvate/Phosphoenolpyruvate kinase, catalytic core 3.2e-55
    Gene3D Pyruvate kinase, alpha/beta 2.2e-24
    FPrintScan Pyruvate kinase, barrel 1.5e-56
    FPrintScan Pyruvate kinase, barrel 1.5e-56
    FPrintScan Pyruvate kinase, barrel 1.5e-56
    FPrintScan Pyruvate kinase, barrel 1.5e-56
    FPrintScan Pyruvate kinase, barrel 1.5e-56
    FPrintScan Pyruvate kinase, barrel 1.5e-56
    FPrintScan Pyruvate kinase, barrel 1.5e-56
    HMMPanther Pyruvate kinase 2.7e-149
    HMMTigr Pyruvate kinase 5e-84

    See the detailed result >

    AT3G22960.1

    Model type
    Protein coding
    Short Description
    Pyruvate kinase family protein
    Curator Summary
    encodes a chloroplast pyruvate kinase alpha subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds.
    Computational Description
    PKP-ALPHA; FUNCTIONS IN: pyruvate kinase activity; INVOLVED IN: response to cadmium ion, glycolysis, lipid metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: plastidic pyruvate kinase beta subunit 1 (TAIR:AT5G52920.1); Has 10289 Blast hits to 10239 proteins in 2715 species: Archae - 167; Bacteria - 6049; Metazoa - 538; Fungi - 221; Plants - 529; Viruses - 0; Other Eukaryotes - 2785 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR