K04316

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04316

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04316

Determination of introduced cDNA(s)

  • J013035H21 - Rice Full-length cDNAs - Original: J013035H21

    full reading [+] show sequence

    Nucleotide sequence: J013035H21 - full reading 
    GCTTCCGCTC GCTCGACGGC TCGAGCTTAA AACCCTAGAG CCGCTCCTCC 
    TCCTCCTCCT CGCCTACCCC GAAACCCAAA TCCCCCCCAA GGCGGACGCG 
    CCCGCAAAGG GTCGAGCGCG CTCATGGCTC GCGTGTACGT GGGGAACCTG 
    GATCCGCGCG TGACGGCGCG GGAGATCGAG GACGAGTTCC GCGTGTTTGG 
    GGTTCTGAGG AGTGTATGGG TTGCTAGAAA ACCACCAGGT TTTGCCTTTA 
    TTGACTTTGA TGACCGCAGG GATGCAGAAG ATGCAATTCG TGATTTAGAT 
    GGCAAGAATG GATGGAGGGT TGAGCTGTCA ACCAAAGCTG GTAGTGGTCG 
    TGGCCGAGAT CGTTCCGGTG GTTCTGACAT GAAGTGCTAT GAATGTGGCG 
    AACCTGGTCA TTTTGCACGT GAATGCCGCT TACGGATTGG TTCTGGAGGC 
    CTTGGCAGTG GAAGACGCCG CAGCCGCAGC CGTAGCCGGA GTCCAAGGTA 
    CCGCGGTCGT AGTCGCAGCC GCAGCCCAAG ATACCGGAGG AGCCCAAGCT 
    ATGGTAGAAG CCCACGGGAT CGTTCTCCAA AGAGGCGCAG CTACAGCAGG 
    TCGCCACCAC CAGCTCGTGC ACGAAGCTAC AGCCGATCAC CTCCACCTCC 
    TCGTGAGCGA AGCTACAGCA GATCACCAGC ACAGCCAGCC AACCGCGAGG 
    AGTCCCCCTA CGCAAATAAC GCGTAACCCG CCTAGTTCCA ATTTGCTGGA 
    AATGTTAGGG GGGCTCGGTG TGTTTTTGTA AGCGCTTGTG TTATGGAGTC 
    TTGAAAAGCT ATAGGGATTG AGTATGTTCT TCGGAAGCAT TTGTGTACCC 
    TTCGGGAAAA ACCCCGCCGC TGCTGATACA ATTGTTGAAG CAGGAGCCTA 
    GCGTTTTGGT CGACTGTATG ACTTTGAGAC CCCATGTAGT CCGTAAGACT 
    AAGTTTTGTA CCATTAGATT TTTCACATTG CTGGAATATT TGTGCTAAAT 
    ACTAGTATTA TTAATTAATG TCTTTTGTAG GTGCTGCTCT

    Gene models with high sequence identity

    1. AT1G23860.4 [+] show detail - RS-containing zinc finger protein 21
      E-value: 1e-23; Score: 107.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RNA-binding domain, RBD 3.5e-16
    ProfileScan RNA recognition motif, RNP-1 15.068
    ProfileScan Zinc finger, CCHC-type 10.971
    HMMPanther ARGININE/SERINE-RICH SPLICING FACTOR 1.1e-35
    HMMPfam RNA recognition motif, RNP-1 9.8e-15
    HMMPfam Zinc finger, CCHC-type 1.9e-07
    Gene3D Nucleotide-binding, alpha-beta plait 6.6e-13
    HMMSmart RNA recognition motif, RNP-1 8.4e-17
    HMMSmart Zinc finger, CCHC-type 7.9e-05

    See the detailed result >

    AT1G23860.4

    Model type
    Protein coding
    Short Description
    RS-containing zinc finger protein 21
    Curator Summary
    Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing.
    Computational Description
    RS-containing zinc finger protein 21 (RSZP21); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: serine/arginine-rich 22 (TAIR:AT4G31580.2).
    Link
    InterPro Scan - TAIR