K04514

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04514

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04514

Determination of introduced cDNA(s)

  • J033066I11 - Rice Full-length cDNAs - Original: J033066I11

    full reading [+] show sequence

    Nucleotide sequence: J033066I11 - full reading 
    GACCTTTCTT CCTCGCGCAA CAGCAGCGGG GCGGGGGCGG GGCGCGGCTT 
    GGCGCGACGC CGAGTGGTGC ATCCCGTGAT TTCGCCGACG TCTTCGCCGC 
    CCGCGGGGCG GGGGGCAGCA GCAGGAGGAG GAGGAGGAGG AGGGGGGAGG 
    CATGGGGAAC GCGAGCGGGC GGGAGGAGGA CCCCGCGGCG GCGGCCGGGG 
    AGGGGGACGT CGAGGACTCG TCGGTCCGGT CCTCGGAGCG CGGCTTCCCG 
    CCGTACGGCG GAGGGGGCAA CCACGTGCGG CGCGCGTGCT CGGTGGGCGT 
    CGTCGGGGGC GGCGGGGGCG CCGGATCGCC GCCCGGGAGC CCCGGCCGCT 
    CCCTCTCGCC GCGGATGTTC GTGCCCCAGA CACCTGTGCC TCCACTCCAA 
    AGAGCAGCTG ATGTAACTCC AGTGTTCAAC CGGATCTTAA TGAATGAACA 
    AGAAGAGGAA TTTGATGGCC CCCCTCAAAA GGAAATTCCT GTCTTGATCG 
    TGTGGACGCT TGGAGGAAAA AATGTATCTG TTGAAGGATC CTGGGATAAC 
    TGGAAATCAA GGAAACCCAT GCAGAAATCT GGGAAAGATC ATTCGCTCCT 
    GTTGATACTT CCATCGGGAG TTTATCGTTA CAGATTTGTT GTAGATGGAG 
    AAAGGAAATG TCTTCCTGAT CTTCCTTGTG AAACTGATAT CATGGGCAAC 
    GCTGTTAACC TTCTTGATGT TCATGATTTT GTCCCTGAAA GTGTTGAGAG 
    TGTGGCAGAA TTTGAGCCTC CCCCATCCCC AGATTCTAGC TACAGTATCC 
    AGGCACCCGA GGAAAAGGAT TTCTCAAAAG AGCCACCGGT TCTTCCATCC 
    CAACTCCATC TGGGTGTTCT CAACTCACAG AACTCTGATG AAAGTTGTGC 
    ACGGCCCCAG CACATAGTCC TCAACCACCT CTTCATCGAG AAAGGCTGGG 
    GTGCCCATCC GCTGGTGGCC CTTGGTCTAA CCCACAGGTT TGAGTCCAAA 
    TATGTAACCG TCGTCCTGTA TAAGCCCATT GAACGATAGC ATAGTCGCCC 
    CCATGAAGTC GAAGTTAGCT TGACAACTCA CTGCGGAACC AACAAGGGCG 
    AGGCCTCGCT TCCTGTAAAA GCACTTCAGG TTCAGGAGTA TTTCCGATAA 
    CTTGCAGGAA CTTTGGTTGG TGTTGTACAT GATGTACCAT CATGATGTCT 
    GGCGCCCTGG TTTGTTTACC TCCGAGGGGC CAAAGCATCA TGAGTTTTTA 
    CATATCAGCA TTTCGTTGTT ATCGATGCTC AAGGTATGAA ATGTGTAGAA 
    AATACCACTT AGAACCGTGG AAATCCACAG AAATCTTAGG TGCCAGAGTT 
    AGATCTTGTG ATCCATAGAT TCTTAATTAT TTTGAACGAT GCTGTTGTTT 
    GTTCTTAATG TAATAAAAAC AGAGGTGCTC ATTTTACTAC T

    Gene models with high sequence identity

    1. AT5G21170.1 [+] show detail - 5'-AMP-activated protein kinase beta-2 subunit protein
      E-value: 2e-75; Score: 280.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SNF1-KINASE BETA SUBUNIT, PLANTS 3.9e-119
    HMMPanther 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNI 3.9e-119
    HMMPfam 5-AMP-activated protein kinase, beta subunit, interaction domain 5.2e-19

    See the detailed result >

    AT5G21170.1

    Model type
    Protein coding
    Short Description
    5'-AMP-activated protein kinase beta-2 subunit protein
    Curator Summary
    Encodes AKINbeta1, a subunit of the SnRK1 kinase (Sucrose non-fermenting-1-related protein kinase). Involved in regulation of nitrogen and sugar metabolism.
    Computational Description
    AKINBETA1; FUNCTIONS IN: AMP-activated protein kinase activity; INVOLVED IN: N-terminal protein myristoylation, cellular response to nitrogen levels; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 5-AMP-activated protein kinase, beta subunit, interaction domain (InterPro:IPR006828); BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase beta-2 subunit protein (TAIR:AT4G16360.3); Has 697 Blast hits to 689 proteins in 198 species: Archae - 0; Bacteria - 3; Metazoa - 248; Fungi - 167; Plants - 204; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR