K04641

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04641

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04641

Determination of introduced cDNA(s)

  • J013071H21 - Rice Full-length cDNAs - Original: J013071H21

    full reading [+] show sequence

    Nucleotide sequence: J013071H21 - full reading 
    GATAGATCCA GCCATTCCAG CGGCAGCCTC TCCTCCGGGC TGCACGCGAG 
    GAGGCCGCAC CAGCCACTCC GGTAGCCTGC CCAGCCACCA GGCGCGCAGC 
    GCACCGCCGC CTCCTCCTTC GTCCCACCCC CTCCGTCGAT GCGCGGCCGG 
    GACTCGGGAG CCCTGCCGGG AGCCGCCGGG AGGTGTCGTC ACGCGGCCGG 
    GAGTCGGGAG CGCCGCCTGT AGCCATTCTC GCGCCGCCGG GAGGTGTCGT 
    CGCGCGGCTG TGGGAGTCTG CAGCCGTCGC CGCGCCGCCG CCTAGTCCTA 
    GCTCTCTCTC CCTAGCTCCT CCCTCCACAT TCCCCCGCCG CCACCACCCC 
    CTCTCCCTCT CTCAAATCTG ACGCGCGCCA CCACATGCTT GGCCACCTTG 
    CCTACACCAG GGGAGAGGCG GCGCTGGCAA GGCTGAAGGC GTACGAGGGC 
    GTGCCGCCGC CGTACGACAG GACCAAGCGC ATGGTCATCC CCGACGCGCT 
    CAAGGTTCTG AGGCTGCAGC CTGGGCACAA GTACTGCCTC CTCGGCCAGC 
    TCTCCAAGGA GGTTGGCTGG AACTACTATG GCACTAAACA TGCTTAAAAC 
    ATACAGCGGA TCTGGATATT AGGAGTATCT GTTGGAATTT GGAAGTCTAC 
    ACACTATGCC GGTTCAGGCT AGCTGTGACG GGCCTAAACC GTCACCTCTG 
    ACGGATTCAG CCCCTCGTCA GAGATTAATG GTCAGTGATG ACTCTCCTCA 
    CCTTTGACGG GTGAAGGCCC GTCAGTGGTG ACCAGCCCGT ATAGAACCCG 
    TCACAGATAT GCCGTCAAAG GTGTGAGGAT CTGGCGTAGT GACAAGAAGA 
    AGAAATTCGC ATTGACAGAG CAAAGCATTC CAAGAACGAT AATAAGAATG 
    AATCCTTCTA AGCAAAATGA TGAAGAAAAC ACTGAACATT TTTTGTTCAA 
    GCAAAGGGTA TAACAGCTCC ATTAATGTGC ATGGAGAAAA GCAACAGTTC 
    ACTTCATATA TCTGTTCAAG AGTACTTCTT TCGGTGTATA TATAAAATAG 
    TTCCATTATA TGTGTATGGA CAAAAAAACA CTGGTCCAGT AACTAGATCC 
    ATAAGTATGT CTGTGTCATT CAGATGGAGC TCTATCAAAA GCTCTGAAGG 
    TATGAACTAC TGTCCTATTT CCAAATATGA GCAGCAATAT TCGTTAAATT 
    GATAAATTTT CACTTTAACA TTTCTATTTG TCAATTGGTC CATACCATCA 
    TGGAGCACCA TGGTTTCAAG ATACTGACAA GTTGAAATAG GGTTGTCTCG 
    ACCAAAATCT GAATATTCAT AAATTGACAA TTCCAAGTTC AGTGAAGTTC 
    TCTGATTCTT CACTTATGTG TGAACAACAG ATTAGTAGTA TTTTTCCTGA 
    GACATTTGGG TAGATTAGTA GTATTATTCC TAAGACATTT GGGTAGATTA 
    GTAGTATTAT TATTCCTGGG ACATATTTGG GTATACGACA TATTTCAATT 
    TATAAGTGCT GAATGTGATA GTTGATCTAA TGCACTTGCA TTTATTCCGA 
    TCTCGATCAA TATGCAAAAT TGCAAATCAC ATCAGCTCGA TACTCAATAG 
    GTCCAAATGG CAGTACCGTT CCGTGCGGCA AAGCCACGGG TACTTGCTAG 
    TTATGTATTA AAATGAGTCC TCTCGTAATT TACTTTTCAG ATTTTACCTC 
    AGCTTCATGG TTATGCTGAT GGTTTTTTTT TGATCGACAT GTCATATTTA 
    TTTACTTTAA TTTAATCATG TGCCCTACTG CATTCAGCTA GCTAATACAT 
    AGGAGTATAT TGATGGACTA CTCTTTGGAA TCTTGGAGAC AATATAAGAT 
    GCCTAGGAGG ACTACATTGA GGTTGTTGCA GAGTATGGTT GGCTGAGTTG 
    GACATTGATT TTTTTTTTTT TTGCTGAGTT ATTTGTGGGT GGACCTAGTG 
    TGGACTTAGT GAATCTAGTT TGCTCTTGTG GCTGCATTTG TTAAGTTAAC 
    CTAGGAGGCT AGGACCTTAT TTTGATATCT AGGATCTGGT GGAATTGAAC 
    CTAGTTTGCA ATTGTAGCTG GATTTATTTT GCTATGGTAT GTACTGATGT 
    GAGGATACAT GTGAATGGGC TTTGATTGTA TGTGATTGGG CTTTACCTGT 
    ATGTGTTTGG GATGATAAAT GGACTTGTGC TATATTGAAT GATAATTGGG 
    CCTTTATGTA TT

    Gene models with high sequence identity

    1. AT3G24830.1 [+] show detail - Ribosomal protein L13 family protein
      E-value: 3e-23; Score: 107.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribosomal protein L13 5.4e-11
    Gene3D Ribosomal protein L13 1.1e-08
    HMMPanther Ribosomal protein L13, eukaryotic/archaeal 9.5e-31
    HMMPanther Ribosomal protein L13 9.5e-31

    See the detailed result >

    AT3G24830.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L13 family protein
    Computational Description
    Ribosomal protein L13 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13 (InterPro:IPR005822), Ribosomal protein L13, eukaryotic/archaeal (InterPro:IPR005755); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT3G07110.1); Has 2057 Blast hits to 2057 proteins in 651 species: Archae - 298; Bacteria - 471; Metazoa - 343; Fungi - 197; Plants - 326; Viruses - 0; Other Eukaryotes - 422 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR