K04922

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04922

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04922

Determination of introduced cDNA(s)

  • J023114G08 - Rice Full-length cDNAs - Original: J023114G08

    full reading [+] show sequence

    Nucleotide sequence: J023114G08 - full reading 
    GAGCCAAACA CCAACAAGGA TAGAGGGGAG AGGCTAGCTT CCTGGAAATG 
    GAGCAGATGA ACACTGCTGC TGCAAAGTCC ATCAGGTGCA GAGCGGCGGT 
    GAGCAGGGTG GCCGGGCAGC CGCTGGAGAT GGAGGAGGTG GAGGTGGCGC 
    CGCCGCGGGC GCACGAGGTC CGGATCAAGA TCCTCTGCAC ATCCATCTGC 
    CACACGGACA TCACCTTCTG GCGTATGGAA GGCAATCATC CGTCTATCTT 
    TGGCCATGAA GCAGTCGGTG TGGTGGAGAG CGTGGGGGAG CACGTGCAGG 
    AGGTGGCGGT GGGTGACATG GTGGTGCCGG TGTTCGCCGC GCAGTGCAGT 
    GAGTGCCCTG ACTGCCTCTC CGACCGCAGC AACCTCTGCT CCAAACTGCC 
    CAACGTCGCC GGCCTCATGC CTCGCGACCG CACGACGCGC TTCTCCTCCG 
    TCTCCACCGG CGAGCCCATC CGCCACTTCC TCTCCGTCTC CAGCTTCGCC 
    GAGTACACCG TCGTTGACAT CACCCACATT GTCAAGCTCG ATGTTGGATT 
    CCCACCGGCG ATGGCATGCC TCCTCAGTTG TGGCATTTCC ACCGGTGTTG 
    GTGCGGCATG GAAGGTGGCA GCAGTGGAGC CCGGCTCGAG TGTCGCCGTG 
    TTCGGCCTGG GTGCCGTTGG GTTAGCGGTT GCTCAAGGGG CGAGGATGCG 
    TGGGGCTAAG AGGATTATTG GGGTGGACCT GAACCCGGAC AAATTCGACG 
    TTGGTAAGAG GCTGGGCATG ACCGACTTCA TCAACCCGAA CGATACCGGC 
    GGGAAGACCG TGAGCGAGGT CATCAAGGAG ATGACCGGGG GCGGCGGCGC 
    CGACTACTGC TTCGAGTGCA TCGGCTCGAC TTCGGTCATG GCGGAAGCCT 
    TCCAAAGCAC TCGAAATGGG TGGGGGAAGA CGATCCTGCT CGGCGTCTCC 
    GGCAACAAGG CGCCGATCAG CATCCCGTCG CACGAGATCC TCCGGGGAAG 
    ATCGGTCATC GGGTCGCTCT TCGGCGGCAT CAAGCCCAAG AACGACATCC 
    CGATGCTGGC TCAGAAGTAC CTGGACAAGG AGCTGGAGCT GGAGGAGTTC 
    ATCACGCACG AGATGGGGTT CGAGGAGATC AACAGGGCGT TCGAGCTGCT 
    CACGCAGGGG AAGAGCATCC GCTGCATCAT CTGGATGGAC GGCGCCAAGG 
    TGATCGACAA CGGCGAGTGA TCGCGGCATC GTCGTCCTGT CGCTAATAAC 
    CGATTAACCG CTGATACCCT GGGAAACAGT TGAGCCTCGC TGTTAACTCA 
    AACTGTCCGT CGTGTCTTTC TGAAGGCTTT GTCTGTTCTC TGTTCTGCAT 
    AAAAAATGCG GTTGACAGCG AGTTG

    Gene models with high sequence identity

    1. AT1G22440.1 [+] show detail - Zinc-binding alcohol dehydrogenase family protein
      E-value: 7e-119; Score: 424.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily GroES-like 1.2e-59
    superfamily NAD(P)-binding domain 6e-49
    superfamily GroES-like 1.2e-14
    PatternScan Alcohol dehydrogenase, zinc-containing, conserved site 0
    Gene3D no description 4.8e-56
    HMMPanther ALCOHOL DEHYDROGENASE 5.7e-97
    HMMPanther Alcohol dehydrogenase superfamily, zinc-containing 5.7e-97
    HMMPfam Alcohol dehydrogenase GroES-like 1.1e-27
    HMMPfam Alcohol dehydrogenase, zinc-binding 5.6e-24

    See the detailed result >

    AT1G22440.1

    Model type
    Protein coding
    Short Description
    Zinc-binding alcohol dehydrogenase family protein
    Computational Description
    Zinc-binding alcohol dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding dehydrogenase family protein (TAIR:AT1G22430.2); Has 32607 Blast hits to 32587 proteins in 3168 species: Archae - 747; Bacteria - 20763; Metazoa - 1197; Fungi - 2370; Plants - 4104; Viruses - 3; Other Eukaryotes - 3423 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR