K04926

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04926

Determination of introduced cDNA(s)

J013107N20 - Rice Full-length cDNAs - Original: J013107N20

full reading [+] show sequence

GTATGTATTG TATATAGCGA GCCCTACCTA CTCCACAAAA AGAGTCCTCT 
CCTCTCCTCT CCTCTCCCTT GCCACCACCA AACTGCAATT AATTGTTTGT 
TTCGCAAAAC AAGCATCCTC GCCTCGGCGT CCCAGATCTC TGCTGCTGGG 
CTGGGCTGCC TGCCTGACAA GAGAGGCAGC AGCCATGGCG TTCGACGCCT 
TCACCGACAA GAACGCCGTC TTCCGCCGCC TCAAGGCCAA GCCCGAGAAC 
AAGATGTGCT TCGACTGCAG CGCCAAGAAC CCCACCTGGG CCTCCGTCAC 
CTACGGCATC TTCCTCTGCC TCGACTGCTC CGCCGTCCAC CGCAGCCTCG 
GCGTCCACAT CACCTTCGTC AGGTCAACAA ACCTAGATTC ATGGACTCCA 
GATCAACTGA AGATGATGGC TTTTGGAGGC AACAATCGTG CCCATGCTTT 
CTTTAAACAG CACGGGTGGA CAGATGGTGG CAAGGTCGAC GCAAAGTACA 
CGTCAAGGGC TGCTGAGCTG TACAGGCAGA TACTGCAAAA GGAAGTTGCC 
AAGAGTTCTG CTGATAACGT CTTGCCATCG TCGCCAGTTG CAGCGTCTCA 
ACCACAAAAT CCATCCGATG ACTTCCCTGA GTTCAAGCTA CCAGAGGCAC 
CAGCAGAGAA TACCAATGGG AAGCAGGAAC CTGATGTCAC CAATTCGCAA 
AAAGCACCTA CGCAGACACG AAAAGCCCCT ACTCATCCCA CTTTTGCCAC 
TTCTGTAAAG AAGTCCATTG GTGCGAAGAA GATTGGAGGC AAGACTGGAG 
GGCTTGGTGT TAAAAAGCTC ACCACAAAGC CAAGTGAAAG CCTGTATGAT 
CAGAAACCTG AAGAGCCAAA ACCTGCTGCC CCAGTAATGA CTACTTCCAC 
CACAAAAAGT GGCCCGTCCT TGCATTCACG TTTTGAATAT GTGGAGAATG 
AGCCAGCAGT TGATTCAAGA AATGGAGGAA CTCAAATGAC TGGCCACGTA 
GCACCACCAA AATCATCAAA CTTCTTTCAA GAGTACGGAA TGGATAATGG 
GTTCCAAAAG AAAACAAGCA CAGCTGCCAC AAAGACCCAG ATTCAGGAGA 
CTGACGAAGC AAGGAAAAAA TTCTCTAATG CAAAGGCAAT TTCATCATCT 
CAGTTTTTTG GCAATCAAAG CAGAGAAGAG AAAGACGCTC AAATGTCCCT 
TCAAAAGTTT GCGGGTTCTT CGTCCATTTC AAGTGCTGAT CTTTTTGGCC 
GCCGCGACAT GGATGACTCG AATCTGGATT TAAGTGCTGC GGATCTCATC 
AACAGAATAT CATTCCAGGC ATCTCAAGAT CTGTCTTCCC TCAAGAATAT 
GGCTGGAGAA ACTGGAAAGA AGCTGACATC TATAGCCTCC AATTTTATCA 
GCGACCTCGA CAGAATCCTT TGAGTGGTTG ATGGGGCGAG ATCATTAGCA 
TTTTTTGTTT TGGCAAACCT GCACAGAATA CCGTATTGAG TTTAAAATGT 
GGTGCAGCTC AGAGAAGCAT TTGTTGCACA GCTATGTAGA TGAAAGTAGA 
GGATTGGCAA TTATGCGTCT GTATTCTTTT TTCCTTTTTT ACTATTGTTG 
GAACCCTGTC CGCATGAAGA TATTTTTATT CGTTTCTTGA CAAGATTGAA 
ACATACGATG GTATTCATTC CAGTTAGTGG TATAGCTGGG AAGAAAAGGT 
ATACTTTGAT GTGCCTGTGC T

Gene models with high sequence identity

AT5G46750.1 [+] show detail - ARF-GAP domain 9
E-value: 1e-108; Score: 390.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Arf GTPase activating protein	26.054
HMMPanther	ARF GTPASE-ACTIVATING PROTEIN	2.7e-125
HMMPanther	CENTAURIN/ARF	2.7e-125
superfamily	Arf GTPase activating protein	7.2e-39
HMMPfam	Arf GTPase activating protein	8.2e-36
HMMSmart	Arf GTPase activating protein	3e-47
FPrintScan	Arf GTPase activating protein	1.1e-23
FPrintScan	Arf GTPase activating protein	1.1e-23
FPrintScan	Arf GTPase activating protein	1.1e-23

See the detailed result >

AT5G46750.1

Model type: Protein coding
Short Description: ARF-GAP domain 9
Curator Summary: A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
Computational Description: ARF-GAP domain 9 (AGD9); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 8 (TAIR:AT4G17890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J033087F19 - Rice Full-length cDNAs - Original: J033087F19

full reading [+] show sequence

GAACACCTCT CTTCTCCTGC GCCGCCGCCG CCTCCTCCTC CTCCCGCATC 
TCCCTCCTCG CCTCTCGCTG CCGGCCGCGC TTCGCCAAGA TGAACAAGGA 
GAGGCTTATG AAGATGGCCG GCGCCGTCCG CACCGGCGGG AAAGGCACCG 
TGCGCAGGAA GAAGAAGGCC GTCCACAAGA CGGGGACCAC TGACGACAAG 
AGGCTGCAGA GCACGCTCAA GAGAGTAGGT GTCAACACCA TCCCCGCGAT 
CGAGGAGGTC AACATCTTCA AGGATGATCT CGTCATCCAG TTCGTCAATC 
CCAAAGTGCA AGCTTCCATC GCCGCAAACA CATGGGTGGT CAGTGGCTCC 
CCACAGACCA AGAAGCTTCA AGATGTTCTT CCTGGGATCA TTAACCAATT 
GGGTCCTGAC AACATGGAGC ACCTAAAGAG GATTGCTGAA GAGATGCAGA 
AGCAGGTAGC TGCTGCAGGT GCCACTGCCC AGGCAAAGGA AGAGAACGAT 
GATGATGTTC CAGAGCTTGT TCCGGGAGAG AATTTCGAAG AGGTAGCTCA 
GGAGACAAAA GCCTGATCAT AGATACCACA AGTAGTGAAA TGTTACTTGA 
CCGCTGTTCT GAGGTCATGG TTTTCTATGA CGGCCCTGTT TTGCTTCTCC 
TCGTAGGCCA ATCTTTGTAT TTGCAATTGG AAACTTTTAG TTTCTCCGAG 
TTTTTACCTA AGTTATGAAT GCTGAGGTGC CATGGGGTCC TTTTTACCTG 
GTTTTGATGT TCACATTTCT GGTTGGTTCA GAATATACTA GCATCAGGGT 
TTGC

Gene models with high sequence identity

AT1G17880.1 [+] show detail - basic transcription factor 3
E-value: 2e-50; Score: 196.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Nascent polypeptide-associated complex NAC	15.647
HMMPanther	TRANSCRIPTION FACTOR BTF3	3.1e-57
HMMPfam	Nascent polypeptide-associated complex NAC	2.8e-19
Coil	coiled-coil	0
Coil	coiled-coil	0

See the detailed result >

AT1G17880.1

Model type: Protein coding
Short Description: basic transcription factor 3
Computational Description: basic transcription factor 3 (BTF3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: Nascent polypeptide-associated complex NAC (TAIR:AT1G73230.1); Has 841 Blast hits to 841 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 427; Fungi - 178; Plants - 145; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
Link: InterPro Scan - TAIR