K04945

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04945

Determination of introduced cDNA(s)

J023148F24 - Rice Full-length cDNAs - Original: J023148F24

full reading [+] show sequence

GGGCCGTCTC CGTGCCAGCA CTGAAGCCGC CGCCGTGCGA CGGCGGCGGC 
GGCGCCGCCT GCCCGCGCGC GTCGGCGCTG CAGCTGGGCG TCTACTTCGG 
CGGGCTGTAC ACCATCGCGC TCGGCCACGG CGGCACGAAG CCGAACATCT 
CCACCATCGG CGCCGACCAG TTCGACGACT TCCACCCGCC GGAGAAGCTG 
CATAAGCTCT CCTTCTTCAA CTGGTGGATG TTCACCATCT TCCTCGGCAT 
CCTCTTCTCC ACCACCGTCC TCGTCTACCT CCAGGACAAC GTCAGCTGGA 
CCGTCGGCTA CGGCATCCCC ACCCTGGGCC TCATGGTCTC CGTCGCCGTC 
TTCCTCTCCG GTACGCCGCT GTACCGCCAC AAGGTGCCCC AGGGTAGCCC 
CCTCGCCACG ATGGGGAGGG TCGTCGCCGC CGCCGTGTGG AAGTGGCGCG 
TCCCGCTCCC CGCCGACTCC AAGGAGCTCC ACGAGCTCGA GCTCGAGCAC 
TACACCACCC GCCGCGGGTT CCGCATGGAC GCGACGGTGT CCATGGCGTT 
CCTGAACAAG GCGGCGGTGA AGCCGGGCGA AGGAGGAGGA GGATCGGTGG 
CGCGGCTGCC CGGGTGGACG CTGTGCACGG TGACGCAGGT GGAGGAGACG 
AAGCAGATCG TGAAGCTGGT GCCGCTGCTC GCCACAATGG TGGTGCCGTG 
CACGCTGGTG GCGCAGGCGG GCACGCTGTT CGTCAAGCAG GGCGTGACGC 
TGGACCGCCG CATCGGGAAG TTCCACGTGC CGCCGGCGAG CCTCGGCGCG 
TTCGTGACGG CGACGATGCT CATCTGCATC GTGCTCTACG ACCGGTTCCT 
CGTCCCCGCC GTGCGCCGGC GGACCAAGAA CCCGAGGGGG ATCACGCTGC 
TGCAGCGGAT CAGCCTGGGG ATGCTGCTCC AGATCGTGAC GATGGTGGTG 
ACGTCGGTGG TGGAGAGCCA GAGGCTGGGG TACGCGAGGA GGCACGGGCT 
GGTCGCCACC GGCGGGCAGC TGCCGGTGAC GATCTTCATC CTGCTGCCGC 
AGTTCGTGCT GCTGGGCGTC GCCGACGCGT TCCTGGTGGT GGGGCAGATC 
GAGTTCTTCT ACGACCAGGC GCCGGAGAGC ATGAAGAGCC TCGGGACGGC 
GATGTCGCTG ACGGCGTACG GCGCCGGGAA CCTGCTGAGC AGCGCCATCC 
TCGCGGCCGT CGAGCGGGTC ACCGGCGGCG GCAAGGGGAG GACGCCGTGG 
GTGACCAACA ACCTCAACGC CTCGCGCCTC GACTACTACT ACGCGTTCCT 
CGCCACCCTC GCCGCCGCGA ACCTGCTGGC GTTCGTCGTG CTCAGCTGCA 
AGTACTCGTA CCGCGTCGAG TCCACGGAGA CCATCGACGT CGACGTCGCC 
ATGGACAACG TCGCGCAGGG CGGCGGCGTG GTGACGGTCA AATCAGAGGC 
AGCCCCAATG GCATGACAGC ACTTCCGGAA TTGTATCCTG TCTATTCCCG 
TCTGGATTCT GAAGTTGCAA TGTAATGAAG AAACGGTGAT GATACATATT 
AGCACTTTAA AAATGTTAAA TGAAAATTTT ATTTACTCGT TCTGTAAAGG 
AACGGT

Gene models with high sequence identity

AT5G46050.1 [+] show detail - peptide transporter 3
E-value: 1e-122; Score: 437.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Oligopeptide transporter	2.6e-81
HMMPanther	OLIGOPEPTIDE TRANSPORTER-RELATED	1.1e-226
HMMPanther	OLIGOPEPTIDE TRANSPORTER-RELATED	1.1e-226

See the detailed result >

AT5G46050.1

Model type: Protein coding
Short Description: peptide transporter 3
Curator Summary: Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies.
Computational Description: peptide transporter 3 (PTR3); FUNCTIONS IN: dipeptide transporter activity, tripeptide transporter activity, transporter activity; INVOLVED IN: in 12 processes; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G46040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR