K05018

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05018

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05018

Determination of introduced cDNA(s)

  • J033007H18 - Rice Full-length cDNAs - Original: J033007H18

    full reading [+] show sequence

    Nucleotide sequence: J033007H18 - full reading 
    GGCACAAACA AAGCCACCCA AAAAAGTTGG GGAGAGGAGA GACCGAGATC 
    GATCCGCACC CACCGCGACA AACGCTCTCC CCTCCCCTCC CCTCCCCCTC 
    CGCCCTTCGC TCCCATCCGC TCCGCCCCCT CGCCGCGCAG CGCCGGCGGC 
    GAGAAGGTTG AGTTCGTGGG GGGTGTGACC GAACGATGGC GTACCGGGCG 
    GACGACGACT ACGACTACCT CTTCAAGGTG GTGCTCATCG GGGACTCCGG 
    GGTCGGGAAG TCGAACCTGC TGTCCCGCTT CACGCGCAAC GAGTTCAGCC 
    TCGAGTCCAA GTCCACCATC GGCGTCGAGT TCGCCACCCG CAGCATCCAC 
    GTCGACGACA AGGTCGTCAA GGCCCAGATC TGGGACACCG CCGGGCAAGA 
    AAGATATCGA GCTATTACAA GCGCATACTA TCGCGGAGCA GTAGGGGCAC 
    TCGTTGTCTA TGATGTCACG CGACATGTCA CCTTTGAGAA TGTGGAGAGG 
    TGGATGAGGG AGCTCAAGGA TCACACGGAC GCCAACATCG TGATCATGCT 
    TGTGGGGAAC AAGGCAGATT TGCGCCACCT TAGGGCTGTC TCGACTGAGG 
    ATGCGAAAGC ATTTGCTGAG AAAGAGAACA CTTTCTTCAT GGAGACGTCG 
    GCCCTGGAGT CAATGAATGT GGAGAATGCC TTCACTGAAG TGCTCACCCA 
    GATATATCAT GTAGTGAGCA AGAAGGCTCT TGACATCGGC GATGACCCAG 
    CTGCACCACC AAAGGGGCAG ACCATCAATG TTGGTGGCAA AGATGATGTC 
    TCTGCAGTGA AAAAGTCTGC TTGTTGTTCA TCAGCGTAGA TCGAAAGGAC 
    TTGACAAACA TGGAGATACC CGAGGTGGTT GATACTATGC AGTAGGACAC 
    AGGATGTTAT TGCATTCATA GACCTCATCT GTATTCATGT GTTACTAAGT 
    GTCTCCTTCG TTTTGCCATT TGAAACATTA ATTCATTCAG GACATAATCT 
    TGCCGGTATA GTTTAGGGAT ATGAAATTGT GAGGCCGTCA GATTTTCATA 
    CAGGCCATTT GTTTGCTTCT ATTATGGTTT GACCGCTTGA TTTATTTATA 
    TGTTGCTGTC TATTTTTCAG TAGC

    Gene models with high sequence identity

    1. AT5G60860.1 [+] show detail - RAB GTPase homolog A1F
      E-value: 2e-106; Score: 382.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 1.1e-63
    HMMTigr Small GTP-binding protein 1.9e-39
    HMMSmart Ras small GTPase, Ras type 3.6e-29
    HMMSmart Ras small GTPase, Rab type 5.4e-113
    HMMSmart Small GTPase, Rho type 4.7e-12
    HMMSmart Ran GTPase 7.5e-13
    ProfileScan Small GTPase 35.971
    HMMPanther Rab11-related 6.1e-93
    HMMPanther RAS-RELATED GTPASE 6.1e-93
    HMMPfam Ras 3.2e-63
    Gene3D no description 2.2e-65
    FPrintScan Ras GTPase 1.5e-42
    FPrintScan Ras GTPase 1.5e-42
    FPrintScan Ras GTPase 1.5e-42
    FPrintScan Ras GTPase 1.5e-42
    FPrintScan Ras GTPase 1.5e-42

    See the detailed result >

    AT5G60860.1

    Model type
    Protein coding
    Short Description
    RAB GTPase homolog A1F
    Computational Description
    RAB GTPase homolog A1F (RABA1f); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1G (TAIR:AT3G15060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR