K05314

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05314

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Original: K05314

Determination of introduced cDNA(s)

  • J023104M08 - Rice Full-length cDNAs - Original: J023104M08

    full reading [+] show sequence

    Nucleotide sequence: J023104M08 - full reading 
    GCCGATCCCC CAAACTCGCA GTCCACTTCC TCCCGCGGAG ATCCATCCAC 
    CACCAGCCGC CAGCCGCCGC GGCGCGAGAT TCAGATTCGT CGTTCTCTTG 
    GTTGTTTGAG GAGGAGGAGG AGGAGGGACA AGATGGGGGC GTGGATGTCG 
    CGGGTGTGGT TCTTGATGTT CCCGGCGAAG GAGTACAAGA TCGTCGTCGT 
    GGGGCTCGAC AACGCCGGCA AGACCACCAC GCTCTACAAG CTCCACCTCG 
    GGGAGGCCGT CACCGCCGCA CCCACCATCG GCAGCAACGT CGAGGAGGTC 
    GTCTTCAAGA ACATCCGATT CGAGGTGTGG GATTTAGGAG GACAAGAGAG 
    TCTACGGACT TCGTGGGCAA CATACTACAG AGGAACCCAT GCTGTCATCG 
    TTGTAATTGA CAGCACAGAC CGTGCTCGGA TCAACATTAT CAAGGATGAG 
    CTCTTCCGGC TGCTTCAGCA TGGGGACCTC GAGGGCGCAG TAGTCCTCGT 
    GTTCGCAAAC AAGCAGGATC TCAAGGACGC CATGTCGCCA GCTGAGATCA 
    CCGACGCTCT CTCCCTCCAC AGCATAAAGA ACCACGATTG GCACATACAG 
    GCCTCATGCG CGATCACCGG TGAGGGCCTC TACGACGGGC TCGGCTGGAT 
    AGCTCAGAAA GTCGCCGGCA AGGCCACAAC AAGCTGACCC ATAGCGCCTG 
    TATTTCCATG GATTTGTTGG AGCTGGCAGG TTGTGTTTGT TATTGCTGCT 
    GCTGCTGCTA CCACTTCAGT GTTTATTTAT GTCTCACATG TCTGAAAAAA 
    ACCATGTCTG TATTCCCTAC CAATCTGAAA TATAAAAGAT CAAATTTGTG 
    CGCAATCAAC TACAAGTTGC TCCATTTTTT TTCTCATATT CTCTGATGAT 
    ATACACACAT CATTTTCCTG TGCGCAATTC TTGAAATTCA GAGTTTTGAT 
    ATTTCTGC

    Gene models with high sequence identity

    1. AT3G22950.2 [+] show detail - ADP-ribosylation factor C1
      E-value: 1e-90; Score: 329.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam ARF/SAR superfamily 1.9e-64
    Gene3D no description 2.1e-59
    superfamily P-loop containing nucleoside triphosphate hyd 3.6e-48
    ProfileScan ARF 22.614
    HMMSmart ADP-ribosylation factor 2.5e-80
    HMMSmart Small GTPase SAR1-type 9.1e-16
    HMMSmart Ras small GTPase, Rab type 9.2e-05
    HMMPanther ADP-RIBOSYLATION FACTOR-LIKE 5, ARL5 6.7e-111
    HMMPanther ARF/SAR superfamily 6.7e-111
    FPrintScan ARF/SAR superfamily 5.1e-18
    FPrintScan ARF/SAR superfamily 5.1e-18
    FPrintScan ARF/SAR superfamily 5.1e-18
    FPrintScan ARF/SAR superfamily 5.1e-18
    HMMTigr Small GTP-binding protein 1.1e-18

    See the detailed result >

    AT3G22950.2

    Model type
    Protein coding
    Short Description
    ADP-ribosylation factor C1
    Curator Summary
    A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor GB:P91924 (Dugesia japonica), other ARFs and ARF-like proteins.
    Computational Description
    ADP-ribosylation factor C1 (ARFC1); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor 1 (TAIR:AT1G23490.1).
    Link
    InterPro Scan - TAIR