K05734

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05734

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05734

Determination of introduced cDNA(s)

  • J023031H22 - Rice Full-length cDNAs - Original: J023031H22

    full reading [+] show sequence

    Nucleotide sequence: J023031H22 - full reading 
    CCTGAGCCTA CCAGGGACAG ACAACCACCG CAAATTGGAG GGAACGGAGC 
    AGAAGGTAGC GAAGCGAACC AAGAAGTCTT CAGTATTCCT TCCTTGCAAG 
    CATCGTTAAT GGAGGGGTCA ACGAGTCAAG ACCATGTGAT TGGGATCCCG 
    GTGAGCAACA CCGCCTATGG CATAGAGGAG CCGGACTTCG CAGCGGAGGA 
    GACGACCACC CCTGATCATG CCGGTTTCGT TGTTGGTTCC TTCCAATTCA 
    ACAACGATGC GAATAGCCCG ACGACGACGA CGACGACAAC CGATCGGGCG 
    AGCAAATATG GCAGGAAGGG GGACAAGATT GCACAGGGCA TCAAAGAACA 
    TGTGACCCTC GGGCCGAAGC TATCGGAAAC GGTCAAGGGG AAGCTCACGC 
    TGGGCGCCCG GATCCTCCAG GCCGGCGGCG TGGAGAAGGT GTTCCGGCAG 
    TGGTTCTCCG TGGACAAGAA CGAGAAGCTG CTCAGGGCGT CGCAGTGCTA 
    CCTGTCGACG ACGGCCGGGC CGATCGCCGG CATGCTGTTC GTGTCGACGG 
    AGCGGGTCGC ATTCCGCAGC GACCGGCCGC TGGCGGTGTC CGCCCCGGGC 
    GGCGACAAGG TGCGCGTCCC GTACAAGGTG ACCATCCCGC TGCGGAAGGT 
    GAAGGCCGCC AAGCCGAGCG AGAACAAGCA CAAGCCCGAG CAGAAGTACA 
    TCGAGGTCGT CACCAACGAC GGCTTCGAGT TCTGGTTCAT GGGCTTCGTC 
    AGCTACCACC GCTCGCTGCA CCACCTGGAG CAGGCCGTCG CGCAGGCGCG 
    GCGATGACAC GCACGAAGCG CGCAAGCGCG CGCACCCATG TCGTGGCGGA 
    GCTCGCTCTC GATCGGATCG GTCTCTTCGT GTCGTACGCT TGTGTATGTG 
    CGTGCGTGCA TCTGTGTCAC TCTAGCTTGG TGATGCTTAG ATGGGTTAGG 
    ATTTGTGTAT GCGTAGGGTT GATCGATCAC AACATGTCGT TGTGTGTTGG 
    GTCGCCATGG CTGGCCTGCT GGTGGATTGA TCGATCGGCA TGCAGTTTTG 
    CAATTGCATC CAGCAGGTTA GATATAGGCG GCTTGATTAG GGCATGCGAT 
    GGCATGTGAT GTTTTGTGGG GCGTGTGCGG AATTGAAATT CATGAAGAAG 
    TTGGATG

    Gene models with high sequence identity

    1. AT5G23370.1 [+] show detail - GRAM domain-containing protein / ABA-responsive protein-related
      E-value: 3e-47; Score: 186.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart GRAM 1.2e-13
    HMMPfam GRAM 7.9e-14

    See the detailed result >

    AT5G23370.1

    Model type
    Protein coding
    Short Description
    GRAM domain-containing protein / ABA-responsive protein-related
    Computational Description
    GRAM domain-containing protein / ABA-responsive protein-related; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GRAM domain-containing protein / ABA-responsive protein-related (TAIR:AT5G23350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR