K06329

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06329

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06329

Determination of introduced cDNA(s)

  • J033097A05 - Rice Full-length cDNAs - Original: J033097A05

    full reading [+] show sequence

    Nucleotide sequence: J033097A05 - full reading 
    GAGTGCAGTG CAGTGCCTCT GAGGTCTCTC TCTCTCTCTC ACACACACAC 
    ACGTCCTCTG GTCACCGACG CTCCTCCTAC TACTAGTACA GTGTGATCGA 
    GCCCCTCCTC ACTTACCTTC GCCGAAGATC CATGGCGGAG GACTAAGCTC 
    CGGCTGCTGA TTTCTTCGCT TTGGACGCCC GCAAAAGTTA CTGCTGCTAC 
    TGCCGGTACC GGCTGCCGAG GAGGGGAATG AGGATGAAGA CGCTGGCGTG 
    CTGCCGGCGG CGGCCGCAGG ACTTCAGCAT CGACATGGAC CAGGAGCCTG 
    ACAGGGTGAT GACGTACAAT GGCCTTGAGA GCTGTATTAT CAACAGTTCC 
    TCTTATGACG ATGATAGTGG CCTTAGTGCA ACAACGGGAG CAGATGGGTG 
    TGTAACCACT GATTCCGTTG ATGATGAAGT CTCAAGTTGC TCCTCAAGTA 
    AAGATGTTTC TAGCTCTTCG TTCTCTTCAC AATGCCATCC ACTGAGAAAG 
    CAAGAGGAGC ATTCACTTTA CGAGTTGGAT ACACTCAGTG CTGTCCATCT 
    ACTTCCTCTC AAAGGGAAGA AGCCAATCAC GTATACCTTG AGTGCTTCAG 
    ACATTGAAAC CATGAAGGAG AAGTTTGGGA AGCTACTGCT TGGTGATGAT 
    GCTTCAGGAG GAGCTAGAGG TGTTTGTGCT GCTCTGGCTT TGTCCAATGC 
    CATTATTAAT CTCTCAGCCA CTATATTTGG AGAACTCTGG AAGCTGGAAC 
    CACTCTGTGA AGAGAAAAAA GTCAGGTGGC GGAAGGAAAT GGACTGGTTG 
    CTTTCTCCTA CAACCTACAT GGTTGAGCTG GTTCCTACAA AACAAAATGG 
    AGCAGACGGG TGCACGTTTG AGATTATGAC CCCGAAAGCA CGTTCAGATG 
    TTAATGTGAA CCTTCCTGCC CTTCAGAAGC TTGATTCCAT GCTAATTGAA 
    GTGCTGGACT CGATGGTAGA CACAGAGTAT TGGTATGTGG AGAGTGGTAG 
    CCGAGCTAAT GGCCGGGGCA AAAAGAATGG TCTGAGGCAG ACGAAGAAGT 
    GGTGGCTCCC ATCACCTCGT GTGCCAGATA TAGGGTTGTC TCAATTTCAG 
    AGAAATAGGC TTGTTTTTCA GGCTAAGCTG GTTCATCAAA TCCTCAAAGC 
    TGCGATGTCA ATCAATGAAG AAGTCCTGCT TCAGATACCT ATTCCTCCAG 
    CTGTCACGGA TGCTCTTCCT AAGTCTGGCA GAGCTGGCTT GGGTGAAGAC 
    TTGTACCATG CTATAACCAC AGAGTACATT CCCATAGAGG AAATTTTCCT 
    CTCTCTTAGT TTAAAAACGG AGCATACCGT GCTCGAGACT ATGAACCGGT 
    TGGAGGGTGC AGTTTTTGCA TGGAATCAAA GGATCTCAGA GGAAAAGAGC 
    AAGAAATCCC CAGGAAGGCA TTCCTGGAAT TTCATGAAGG ATAGTTCATC 
    AGAACTCGAT AAGATGTCCA TGTGCATAGA AAGGGTTGAA ACACTTATGC 
    AGCTTCTGAA ATCCAGATTC CCGAGCCTTC CTCCAACTTT TATAGAAGTT 
    GTAAAGATCC AATACAATGT GGACGTGGGG CATGCCATTG TGGAGGCCTA 
    CTCAAGGGTT CTTGTTGGGG TGGCATTCAG CATACTGTCC AGGGTAGCAG 
    AGATTCTGCT GGAAGATGAC CTGATCAAGA AGCCCAACAC CCCTCTGGCC 
    ACACTCAAGT TCGACCTCTC CTCCGACGTG TACCTCGCCG GCATCACCGA 
    GACGCCGCCG GGCCACATCC GGCGGTCGCT GATGGACCAG ATCAGCCTGG 
    TCGACGGCAG CCTCGACGCG GTCGTCAGGA AGAAGGGGGT GAAGCAGCTT 
    AGGTGGTGAA AAAGGACATG AAGCTGTGAA GTTTTTCTTT TTGGCAGTTG 
    TACAGGGTTT GTGATGATGA TGCATGCTGT GCTGCGCGCT GGCTGGCTAC 
    ATAAAGTTGG TTAAGTTCAC CTTGCTAATA CGTCCTGTAT GGAACGGGCT 
    AAATAGTGTA TGCATGGTAA AAGCTACTAG CATTGGCCGC ATCGTACATC 
    AACGTTTGCA GCG

    Gene models with high sequence identity

    1. AT1G31650.1 [+] show detail - RHO guanyl-nucleotide exchange factor 14
      E-value: 4e-131; Score: 465.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Rop nucleotide exchanger, PRONE 3.8e-138
    ProfileScan Rop nucleotide exchanger, PRONE 98.521

    See the detailed result >

    AT1G31650.1

    Model type
    Protein coding
    Short Description
    RHO guanyl-nucleotide exchange factor 14
    Curator Summary
    Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
    Computational Description
    RHO guanyl-nucleotide exchange factor 14 (ROPGEF14); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 7 (TAIR:AT5G02010.1); Has 302 Blast hits to 301 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 302; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR