K06516

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06516

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K06516

Determination of introduced cDNA(s)

  • J033004E24 - Rice Full-length cDNAs - Original: J033004E24

    full reading [+] show sequence

    Nucleotide sequence: J033004E24 - full reading 
    GGTGGGACAT TTATATGCGA TGAAGTCGGC TATTGGGATG TTGTCAACTG 
    ACAAACTTGT GAAAATCATC AGAGACCGAA AAAACGAGAT GCCGACTGAG 
    GTGCAAAATT ATCATCAAGA AGTGATGGAG CGGCTTCCTG CAATCCTTCC 
    TTTCACCCCA CATTCTCATT GTGAAGAACA AGATACAGTA CCAATTGGAT 
    TTATGGAAAA AATTGAAGAA TTGAAGAATA TATTGTTGCG AGATGCTGCT 
    CCAGTGATCT TTGTCAGTGG AGAGCAGCTC TCAGGGAAGA CTACTCTCAT 
    GAACCAGGTG TATAAAGACA TCGATGTCAG GAATCATTTC AAAATACGTT 
    CCAAGGTCGA CGTGTCAAAA ACTAGATGTT TGAGTGACTT GCTGCGGGCT 
    GTGCTGAAAC ACGAAGAGCG TGAGACAAAC TCCATGTATC CCGATGCCAT 
    TGATGAATTG AAGATAATTG AAGAGATCCA GCGTACCTTT CGGACTGTGG 
    GCAATCGCTA CTTGATGGTG ATGGATGATG TCGACGATAC ATCTTCGCTG 
    CATGTTTTAC GACATGTCCT AGGAGGATGG GAGGGGAAGA TTGTGTGCCT 
    GACCAGGAAC ACACGTATAC AGTACGAAGA GTTGCATGCC AAGGTTGAGA 
    TTCGCCCTCT TGAACTGGCT TACCAACAGC AGCTACTGGT GCATGTAGCT 
    TTTCGCAATG CTGATGACAC CCCTGCTCCT GTGGCCGTCG ATAGAAACAA 
    TGATGGGCAG CAAGGAGGAG GAGAATACGA TCAACTGGAA AAGGCTCTCA 
    AGGGGAAGAC AGAGACAGAT AACATCGATG GAGATGACTT GACGCCAATG 
    GTGGAGACTC TGAAAGGCAT CTTGAGGAAA TGCAGAGGCA ACCCGTGGAA 
    CATACGGGCC GTGGGAGCGT TGCTTGGTGC TAATCGCGTC GATAAATGGA 
    AGGAAATCGA GGAAAACCAA GTTGATGATT TGGTAATAGG AGATAAGAAG 
    CGTGATCCAC TCATACCAGC AGAGTATGCC CAACTGCCCG CTGACATCCG 
    GCTCGGCTTC TTGTACTGCC TGGCTTTTCC AGAGAGATCA GAAATCCCTG 
    AGAATTCATT GATCCCTGCA CGGAAGCTTG TGCGCCTCTG GACGGCAGAA 
    GGCTTCCCAC CGGACGACAG CCCACTTCAG AGCCAAGAGC AAGAGGCAGA 
    GAACCTGCTA CAAAGACTCA TTGACTACAA ACTGCTCGTG GTGAAGAAAA 
    CAGGCTTGGA TGGCGAGGTG CTGAAATGCA AGGTCAACGA GCACATGCGA 
    TCCCTGGCTC TGGAAATGTG TGAGGCACAG AAAATCTGCA GATTTGCACG 
    GGACCCCGCT CACCCGGCAC CCCGAGCCAG ACCCAGCTCG AGCTTGTTCA 
    GCAGAAAGAC AGCACTGTTG CACCGCTACC GTGTACTCGC TGTGCATGGA 
    GATGGAGACG GCAATGAAGC TGTCCAAGAA ATGTCTAGTG CGATGAGTAA 
    AGACATTCGG CTGCGCTCCC TGCTGTATTT CAGAACCGAG AGGAAGGAGC 
    CTCCCAAGCT TGAGCTGTCA TTTGGTCGGA CGTACAAGCT TCTACGCACG 
    TTGGATCTTC AGGGAACTCG GCTCACCCGC TTGCACTCCA GTATCACCTG 
    CCTCGTTTGC CTGCGCTACC TAGGCCTGCG AGGAACACAG CTGGAATATC 
    TCCCTGAAAC TCTGCAGAGC CTCCGCCGCT TGATGTGCCT CGATATCAGG 
    GACACTGGCA TCACAGAGGT GAACGATGTG TCTGAATTTA AAGAGATGAG 
    GCATCTCTAT CTTGCAAACT CCTTCCGCGA CCAGTCCGTG CTCATCAAGG 
    AAGGCCTGCT GTCGCTGCTT CATCTGCAGA CGCTGTCAGG TGCAACACAC 
    GAGGTGCCTT CTGAACGAAA AAAGGCAGGC ATGGTACCTT TCGAGCAAGA 
    ACTGCTATAC CTCAAGCTCC TTAGGAAGCT ATCAGTTAAG AAGGCATCAA 
    TCTCATGCAG CAAAGGCATC TCTGATGCAA TCAACAAGAT GGACCTCCTA 
    CAATCGCTCA CTATAACATG TGCTGCTGGT GAGAAGAGGG GGTTCAATTT 
    GAGTTATCTA AATGTCAACA AGAATCTCCG TAAGCTGAAG CTTGGGGGTC 
    GTATGCAGAA ATTTGACCGT CTACAACCAA AGCTTCAATC CATAACATAC 
    CTCTACCTCT GGGACAGCAA ACTGCCAGTA GAAGGTAAAG ATCCACTACA 
    GCTTCTGCAA GGCCTTCAGC AGCTTCTCCT CCTCTCGTTA TACAACGTCT 
    ACGAAGGGGA GAAGTTGACT TGTACCAATG GCTACCACAA ACTGAAGAAG 
    CTGTCCATCA TCGCGATGGG AAAGCTCAAT GAGTGCACGT TTGGCACCAA 
    GAACATGGCA AACCTCGAGG TGCTTGTTTT TGCTAAATGT GCAAGACTCA 
    GCAGCCCGCC GCCGAAGCTT GATGAACTAA ACTTCCTCCG GGAGGTGCAT 
    TTGGCTCAAA TGCCTCAAGG ATTCTATGAC GGCATGAAGC CAGCAACCAA 
    GAAGCTCGTG CATTTTCCAG AGTTCCAGCA CCACTTCCAC TCGTCAACCA 
    GAGCTGTCGT GCAAGGGGGA AGCTAAGCCA TAATCGCCGA TCCGTTCGCT 
    TCACTCACCA CAGGCTTCTG TTTCAGTGCT GTAATTTCCG GCCAGCTTCT 
    AGTCACAGCT TCATCAGTTC GGTGTGGCCG TCAGATATAT TTGCTGTGCA 
    AGTTCTGAAT ATTTACCGTT TCATAAATCA GAGTTGAGTG AACTACTTTC 
    AAAATAAATT TAGTCATCAG TGAACTACGT CCATATATGG TGAGATCCCT 
    GCCCGCCCTC GTTTACTGCT GTTTCAATAA GGCTGTATGT TTTCACAAAC 
    ATGGTGTTAA TGGTGAGTGT TTTTTCTTAA AAAAAAAATT GGCAATGGTG 
    ACCAATTGGT AATCTACTAC GGTTGCCCC

    Gene models with high sequence identity

    1. AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
      E-value: 3e-27; Score: 121.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.9e-07
    Coil coiled-coil 0
    HMMPfam NB-ARC 1.3e-15
    HMMPfam NB-ARC 1.4e-09
    superfamily L domain-like 9.6e-26
    superfamily P-loop containing nucleoside triphosphate hyd 2.5e-06
    FPrintScan Disease resistance protein 1.5e-07
    FPrintScan Disease resistance protein 1.5e-07
    FPrintScan Disease resistance protein 1.5e-07
    FPrintScan Disease resistance protein 1.5e-07
    HMMPanther LEUCINE-RICH REPEAT CONTAINING PROTEIN 2.5e-05
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2.5e-05

    See the detailed result >

    AT3G07040.1

    Model type
    Protein coding
    Short Description
    NB-ARC domain-containing disease resistance protein
    Curator Summary
    Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
    Computational Description
    RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J023041A15 - Rice Full-length cDNAs - Original: J023041A15

    full reading [+] show sequence

    Nucleotide sequence: J023041A15 - full reading 
    GTCCCTCTCG CGTTTTCCTC CCCATCTCTC CTCCTCCTCC TCCTCCGTGT 
    CTCCGCCGGT GGTGCCCCGG CGAGCTCTCC TCCGCCGCCT CGGCGCGCCA 
    CCTCTCCTCT CCTCGCGCCG CGGGGGAGAA GCCGAACGGG CGCCGGAGAC 
    ACGGCGCGGA TTGCCTCACC CCCCTTAGTG GCCGTATCAA CTATCACCCT 
    TGGTGCGCGG CCTCCTCGCG CGCGCGGGAA CGGCGATCGT ATCGGGGTCG 
    GATCGGATTG GAGGGGAGAA AAACTCATCA AGTAATTGAA GGTGGTGAAT 
    ACACTTTTAC GGGGCATTAT CATCGTTCCT AGGTTCAGCT GCAAAAAGTT 
    AAAGCAAATT GCCAAAGATG ACATCTGAAG AGAATAAAGC TGTTGCACAT 
    AATGAACCAC TACCCATGGA GCAGACATTA AGCTCTGGTG CTAAGCGTAA 
    GCGTGGTCGT CCACGGAAGT ATGAGTACGG CATGCATGAA TTACCATATA 
    GTGTGCAGCA CATTCAGAGC GTCCCACCTC TTCACAGCAC ACAAGATAGC 
    TCAAACATCC GACAGGATGG GATACAGATC AACCATACAT CAGGTGGTAG 
    CTTTGGCCCT AATATAGGCA CAATTCAGGC TTTGCCTACA AAGCAAGGCC 
    CAGCTAATAG ATCCAGTGGA CCTAGAGATT CTGTCAATCT GGTTAAGACT 
    TCTCTCAGCC AAGCCTCCAT TTATACTAGT GCTCCTTTGC AAGGTAATTC 
    AGTCAAAGAT GATATTGTTG GCAAGTATTT TGTTGGTAAG ATGTCGAAGA 
    AATTTCCTGG GTTTTCTCTG ATTACGGTGA AAGTGAAGGA CAATCAGGTT 
    CTCAAAGGTT GGATTCCAGA TGAAAATAAC CTCCGCCCAA TAACACCAAA 
    AGATGATCTT GCCCCAGATC TCCCTATGCT TCGACCAAGT CAAGTTCGAA 
    AGAGGCCATC TACTGTTTAC AGACAAGCTT CTGGTCCTAT TCCAGTCCCC 
    TTGGAGGATG TTACATTTGC AAAGCCTCTA CAGATGAGGA GGCCTGTAGA 
    GAAATCCTTC ACTAAGCACA CGGTCCCTTC CGTTCCAAGA CCTCACATGG 
    GTTCTGGGGT TGTTGCAGCA GTACCTATCT CAGTTTCACC CAGTAATGCT 
    GAATCAAGGA TTTTCTCCGA GCAGGGTACT GAACATGTGA ATCCACAACC 
    GTTATCTGCT GTGGTACCTA TTAAATCAGG TCAACCTGTA TTGGCATCAT 
    GCAAGGAAGT CGCTGGAGGG AAAACTGTCA ATGAGATTCA AACAGTCTCT 
    GAATCTTCAA AGCACACTGA AGAGTCATCA GGGGAAAGGC ATCTGCTTAA 
    TGTTCCAGTA ATGGATGCTA TAAAGGAATC TTTGGGTCCC AAAGAGCAGC 
    CTAATGCTAC AAATAGCAAG CAACAAACTT TTATGGAACC ACCGGAAAGC 
    ACAGAACAAG CTGTGCAGCT GGACACAGAG AGAGACATTT CCAAAGGAGC 
    TGATGACTCA AAGTCAGAAG CCTCAGGAGG AACTGCACCT CCGGTAGAGG 
    CTTCAACCGC AGTACATAAT CCCCAAGATG ACAGTCATGA AATGAAGGTT 
    GACAACAAAT GAAAGCAGCG CTTGAGAAAG ACAAAATGAT TCTTAATGTT 
    AGGTGAAAGC TTCAAATCCA GATTGTTTCT GCCAAGTCTT ACTATAAATG 
    GCTGGATGCC AAAGGCGTAG ACTCGTACTC TAGGATATAT ACTTGTCTTT 
    CGCTTTTATT TGTCTTCCTT ATAAGGATAC TTGAGCTATC TTTCATTTTC 
    ATTCGTCTTC CATTTAAGGA TACTTGAACC TTTTAATAAT GATGTAAAGC 
    CATACAAAAA AGTTACTTCA TACTTGGAAC AAAAAGAAAT GAGAAAAAAC 
    TTGGAAGGAC TAGGCCCCAT ATAGGAAAAT GGCATATCTG AATCGAAAGC 
    ATTTGTACCA TGGCCCTTGT GATAATTAAG TAACAGAAGG CAAGCTGTTA 
    TTG

    Gene models with high sequence identity

    Not founds.

     

    InterPro Scan Digest

    See the detailed result >