K06540

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06540

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K06540

Determination of introduced cDNA(s)

  • J013096O22 - Rice Full-length cDNAs - Original: J013096O22

    full reading [+] show sequence

    Nucleotide sequence: J013096O22 - full reading 
    GGGCCTGGAG CTGGAAGCCT TGTAAGTGGA ACAGAGACAG TCAGCTCCAG 
    CCACTGCTCC TCGGCTTCTT CTTCGTCCGC CTCTGGACGG CGGCCATCGA 
    GAGGGTGGGG CTCCTCCGGC AGCCGTTCAC GCGCCAGGAG AACACCGTCA 
    TCCAGACCTG CGTCGTCGCC GGCTACGACA TCGCCTTCAG CGGCGGCTTT 
    GGTAACTACA TATTGTCCAT GAGTGAAAGA ATCGCTGGGC TGGGAACCGA 
    GGCAAATAAT GCTCAAAACA TAAAAAATCC CCATCTAGGA TGGATAATTG 
    GTTTTCTGTT CTTGGTCAGC TTCATTGGGC TCTTTGGTCT TGTGCCCTTG 
    AGAAAGGTTA TGATCATTGA CTACAAGCTA ACTTATCCAA GCGGCACTGC 
    AACTGCCTTC CTCATAAACG GCTTTCACAC GCCCCATGGA GCCAAGATTG 
    CAGCGAAGCA AGTAAAGAAA CTCGGTATAT TCTTCATCCT CAGCTTCTTC 
    TGGGGTTTCT TTCAGTGGTT CTACACAGCT ACCGATGATT GCGGATTCCA 
    TAAATTCCCA TCACTAGGCC TTCAAGCTTT CCAACACAAG TTCTTCTTTG 
    ACTTCTCACC TACTTATGTC GGAGTGGGAA TGATTTGCCC ACACATTGTT 
    AACGTATCTG TTCTCCTTGG AGGGATCCTC TCATGGGGCA TCATGTGGCC 
    TCTCATAGCC AAGAAAAGGG GAGATTGGTT TTCTGCTGAT CTCCCTGACG 
    GTAGTCTTCA TGGAATGCAA GGGTACCGGG TCTTCATAGC CATTGCCTTG 
    ATTCTTGGGG ATGGCCTCTA CAACTTTCTC AAGATGATTA TTCTCACAGC 
    CTTCTCGCTA AGATCTCAAA TCAAGAAGAA AAATGCTAGT ACACTTCCAG 
    TCTCTGATGA TGGCATGGTT ACCACTACTG CAGCTGTCTC ATACGACGAG 
    GAGCGGCGCA ACGAACTCTT TGTCAAAGAT CAAATTCCAT GGTACGTTGC 
    ATATGGAGGC TATGCTGTTG TTGCTGCCAT TTCTATCGGT ACTGTCCCGC 
    AGATAATCCC ACAGCTGAAG TGGTACCAAA TCTTGGTAGC CTATATCGTC 
    GCGCCAATTC TTGCCTTCTG CAATGCCTAC GGAACTGGCC TCACTGACTG 
    GTCTCTTGTT ACAACCTATG GAAAGCTTGC AATCTTTGCA TTTGGTGCAT 
    GGACCGGTGC TTCACATGGT GGTGTTCTTG CTGGCCTGGC TGCCTGTGGT 
    GTGATGATGA ACATTGTGTC TACTGCTGCT GACCTGATGC AGGACTTCAA 
    AACAGGGTAC CTCACACTGG CCTCACCCAG GTCAATGTTC GTCAACCAAG 
    TCATTGGCAC TGCAATGGGC TGTGTCATTG CTCCCTGTGT GTTCTGGCTT 
    TTCTACAAGG CCTTTGATAA TATTGGCATC AGTGGCAGCG ATTACCCAGC 
    GCCAAATGCT GCCGTCTTCC GGAGCATAGC GATACTAGGT GTTGATGGCT 
    TCTCCTCGCT TCCAAAGAAC TGCCTCAATC TCTGTTACGC GTTCTTTGCT 
    GCTGCAATTG TCGTCAACCT GATAAGAGAT CTTGTGCCAA AGGTGTCAAG 
    GTTTATACCG ATCCCGATGG CTATGGCGAT ACCTTTCTAC ATAGGATCAT 
    ATTTCGCGAT TGATATGTTC ATCGGGACAG TCATATTGTT TGTCTGGCAA 
    CGAGTGGACA GGGCGAAAGC AGACACGTAT GGACCTGCAG TCGCTTCAGG 
    CATGATATGT GGTGATGGAA TTTGGGTTTT GCCTCAGTCG GTGCTTGCTC 
    TTGCCAAGGT GAAGCCTCCA ATCTGCATGA AGTTTCTGTC GAGAAGGACG 
    AATGACAAAG TGGATGCTTT TCTTACAACA TTGGGAAAAT AAGTTGCAAC 
    AACGATTCTG ATGAAGAAAA GATTCAGTTG AACATTATTA CATTAGCCCG 
    TGTATATATT GGATAATTTT CTTTTTTTTT CCAGCAGATC CATGTCAGTA 
    AGAATCCAAT GAAGTGTGGC ATACTATACG ATAGTAGATA AATAAGTGTG 
    TACAGAGACA AGAATGGGAA TAAATTATCT TGTTTACGTT

    Gene models with high sequence identity

    1. AT1G65730.1 [+] show detail - YELLOW STRIPE like 7
      E-value: 0; Score: 792.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Oligopeptide transporter OPT superfamily 2.4e-71
    HMMPfam Oligopeptide transporter OPT superfamily 1.1e-129

    See the detailed result >

    AT1G65730.1

    Model type
    Protein coding
    Short Description
    YELLOW STRIPE like 7
    Curator Summary
    Arabidopsis thaliana metal-nicotianamine transporter YSL4
    Computational Description
    YELLOW STRIPE like 7 (YSL7); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 5 (TAIR:AT3G17650.1); Has 1836 Blast hits to 1794 proteins in 556 species: Archae - 19; Bacteria - 893; Metazoa - 0; Fungi - 266; Plants - 510; Viruses - 1; Other Eukaryotes - 147 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J023125I06 - Rice Full-length cDNAs - Original: J023125I06

    full reading [+] show sequence

    Nucleotide sequence: J023125I06 - full reading 
    GGTTCATCTC TCCCAATCTT CAACTTCAAG AACCAACCAA GGCTCTTGTC 
    GCCATCCCCC ATCCGCACCT GTTTCCCGTC TCTCCTCCTC TGCTCTCTCT 
    CCCCGTATAT GGCGGCCACT CAGCTCTGGG CTCTCGCGCC ATTGGCGCTC 
    CTCCTCGTCC TGCAGCTCGC CGGCGCGTGT CACGCCGTCC CCCAGAGCCT 
    CGAGGCCGAG CAGGCGTCGG ACTCCCACTT TCAGCCGCCC ATGATGAACT 
    GGATCAACGG AATGGTCGGA TTGTGCATTG CCTCCGCCGC CGTCGCCGTC 
    GCGGCGGAGT TGTCTCGGGA GCAGGCGTGC CTGGGCCTGC TTCTGTGCCT 
    CGCCTTCCAT GCCGGTATCG CGCTCGTCAT CCGCGCCGCC GCCGCCCCTG 
    ACGCCGGCCG GTCGCTCGCT CGCACGCAGA GTCGCCGGAA TCGGAATTTA 
    CTCTATAGTT ATTACTTGTA GTACTATATA TAAATATAGA TATGGAGTAT 
    ATAATTATGG GGATGTGTGA TGTGTGCTTG TCTTAACTTT ATCTTGTTTT 
    GTTCAGCTAT ATATTCGCAC TGAAAAGTTG CTTGAATTAT CTAAAATAAA 
    TATTTTGTTT ACTGTTTGCT

    Gene models with high sequence identity

    Not founds.

     

    InterPro Scan Digest

    See the detailed result >