K06605

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06605

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06605

Determination of introduced cDNA(s)

  • J013119A09 - Rice Full-length cDNAs - Original: J013119A09

    full reading [+] show sequence

    Nucleotide sequence: J013119A09 - full reading 
    GTGGTTTGAC TAGTCCTCTC TCTCCGGGAG AAATTTTGCT CCGGCCGCCT 
    CGGCGTCGCG CTCCGCGGCT CGTAATCTTT CGCGGTGGCC GGCGGCGGGG 
    GAGAGGAGGA GGAGGAGGAG GAGGGAGATG AAGGCGTGCG CGAGGGCAGC 
    GGGGGAGAGG CTCCCCCTGG TCGGTGCTCC CGCCAGGCAA CCCCTGGCTC 
    GGAGTTTTGT TAAGGTCAAC AGATTATCAT CTCAACATGA GACGAAGTCT 
    GTGGTATCCT GCTCGGTAAG GGTGTCAGAT GACAAGACAC ACCGAATAGA 
    AGCCACGGCA GAACACATCC TTCCAGCAAC AAATGATCAT GTCATGAAAG 
    CAATTGACTC AATTAACAGG GGGCAAGTGA TTGCGGTGCC CACCGATACG 
    ATTTATGGCT TTGCTTGTGA TGCATGCTCT GCAGAAGCAG TTAATCGTAT 
    ATATGAGATC AAAGGACGCG TACAGACACG GCCTCTTGCA ATCTGTGTTG 
    CTGATGTCCC AGACATATCA CGGTTTGCTG TTGTGGATCA CCTACCTCAT 
    GGCCTGCTTG ATAGTCTACT TCCTGGGCCT GTCACAGTTG TTTTAAAACG 
    AGGTAACAAC AGTATATTGG AGAGATCTCT TAATCCTGGT TTGGAAAGCA 
    TTGGAGTTCG TGTGCCAGAT TTTGATTTCA TTCGAGCCAT TTCCCGTGGT 
    GCTGGAAGTG CGCTTGCACT TACAAGCGCC AACTTAAGCG GGCATCCTAG 
    TAGTGTCAAC GTCAAAGATT TTGAGGATCT GTGGCCACAT TGTTCATATG 
    TCTTTGATGG TGGAATCCTC CCTTCTGGGC GTGCTGGTTC AACAATTGTG 
    GACCTAATAA CACCAGGAGT CTACAAGATA TTGAGAGATG GAAGTTCAAG 
    GCAGGAAACG ACAGCGGTGC TCGGCAAGTT TGGCTTTGTT GAAGCTTGGT 
    GACAACTTGT TGACCTCATA AAATTGGTAC CATCAAATAC TAGTCCCTTT 
    GTTATCTATC TGGCTTCTTG CTTAGTTAGG TGCTGTACCA GAATATAGGT 
    TGTTGTTTGT GCTTTTCTTT TTCATATTCT GAATCAGAAG GTGTCAGCTT 
    CCTGTTTCAA TGTCAATGCC CTTACAGTAT CACGTGAACT TCGATTGCTA 
    CACTACAGTT CATTCTATGG TAGATTACAC TAGCATGCCT ATGCAAGCTA 
    AAAGAAATAT TGATTGTAAT GGATTTTAAT

    Gene models with high sequence identity

    1. AT5G60590.2 [+] show detail - DHBP synthase RibB-like alpha/beta domain
      E-value: 2e-78; Score: 290.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D DHBP synthase RibB-like alpha/beta domain 3.5e-43
    superfamily DHBP synthase RibB-like alpha/beta domain 3.8e-49
    HMMPfam Sua5/YciO/YrdC, N-terminal 2.4e-45
    HMMPanther SUA5 1.2e-48
    HMMTigr Sua5/YciO/YrdC/YwlC 1.5e-33
    Coil coiled-coil 0
    ProfileScan Sua5/YciO/YrdC, N-terminal 25.736

    See the detailed result >

    AT5G60590.2

    Model type
    Protein coding
    Short Description
    DHBP synthase RibB-like alpha/beta domain
    Computational Description
    DHBP synthase RibB-like alpha/beta domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sua5/YciO/YrdC/YwlC (InterPro:IPR004388), DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945), Sua5/YciO/YrdC, N-terminal (InterPro:IPR006070); BEST Arabidopsis thaliana protein match is: DHBP synthase RibB-like alpha/beta domain (TAIR:AT3G01920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR