K06623

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06623

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06623

Determination of introduced cDNA(s)

  • J013116O19 - Rice Full-length cDNAs - Original: J013116O19

    full reading [+] show sequence

    Nucleotide sequence: J013116O19 - full reading
    GCTCCAGCAA GCAGCTAGCT ATAGCTAAGC TCTGAGCGAT CCATGGCCAT 
    GAAGTGCCTC TTCCTCTTCT TCGCCTTCCT CGTCGCCTTC TTCCCCGGCG
    CCGCCGTCGG CGCCGGGCTG AAGGTCGGGT TCTACAACAA GACGTGCCCG
    TCGGCGGAGC GCCTGGTGCA GCAGGCGGTG GCCGCCGCGT TCAAGAACAA
    CAGCGGCGTC GCCCCCGGCC TCATCCGCCT GCACTTCCAT GACTGCTTTG
    TCAGAGGCTG CGACGCCTCG GTTTTGATCG ACGGGAACGA CACCGAGAAG
    ACCGCGCCAC CAAGCAACCC CAGCCTCCGC GGATTCGAGG TGATCGACGC
    CGCCAAGGCC GCCGTCGAGG CGGCGTGCCC GCGTGTCGTC TCCTGCGCCG
    ACATCCTCGC CTTCGCCGCC CGCGACAGCG TCGCCCTCAC CGGCAACGTC
    ACTTACAAGG TCCCCGCCGG CCGCCGCGAC GGCAACGTCT CCATCGCCCA
    GGACGCGCTC GACAACCTGC CCCCTCCCAC CTTCAACGCC ACGGAGCTCG
    TCGGCCGCTT CGCCAACAAG TCGCTCACCG CGGAGGACAT GGTGGTGCTC
    TCCGGCGCCC ACACCATCGG CGTCTCCCAC TGCGACTCCT TCACCAGCCG
    CCTCTACAAC TTCACCGGCG TCGGCGACGC CGACCCGGCG ATCAGCGCCG
    CCTACGCGTT CCTCCTCCGC GCCGTGTGCC CCTCCAACAG CAGCCAGTTC
    TTCCCCAACA CCACGGTGGA CATGGACGTG ATCACCCCGG CGGCGCTCGA
    CAACAAGTAC TACGTCGGGG TCGCCAACAA CCTGGGCCTC TTCACGTCGG
    ACCACGCGCT GCTCACCAAC GCCACGCTCA GGGCGTCGGT GGACGAGTTC
    GTCAAGAGCG AGACGCGGTG GAAGAGCAAG TTCGTGAAGG CCATGGTGAA
    GATGGGCGGC ATCGAGGTGA AGACCGGGAC GACGCAGGGC GAGGTCAGGC
    TCAACTGCAG GGTCGTCAAC AAGAGGAGCG CCAACGCTGA GCTCGAGCTC
    GAGCTCGCCG CCGCCATGGA TGATGGGGAT GAAGTGGCAG CGAGCTAATT
    AATTAAGGTG GTAGTAGCTG ATCTGATGTC GCGTGTTCTT CAGAGGTTTC
    AGCAATAAGT TTGTGATCGG TGTTGTTACT TGTTAGATGT ATGCTGCTGC
    TGTTTTTAAC GAGAATAAGA GTTGCTGGAG AAGAAGTTTT TTTCTTCTTG
    TTGTTTTTTA ATTTGTTTTC TGTTTTGGCT TGTGTTTGGG TGAGTGCTTT
    GGTGTGAACC TGTCATGAAA TCAAGGAAGA AATTTGGCGA AATGTTGCCG

    Gene models with high sequence identity

    1. AT4G11290.1 [+] show detail - Peroxidase superfamily protein
      E-value: 8e-70; Score: 261.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Plant peroxidase 9.1e-54
    FPrintScan Plant peroxidase 9.1e-54
    FPrintScan Plant peroxidase 9.1e-54
    FPrintScan Plant peroxidase 9.1e-54
    FPrintScan Plant peroxidase 9.1e-54
    FPrintScan Plant peroxidase 9.1e-54
    FPrintScan Plant peroxidase 9.1e-54
    FPrintScan Plant peroxidase 9.1e-54
    FPrintScan Plant peroxidase 9.1e-54
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1e-28
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1e-28
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1e-28
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1e-28
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1e-28
    Gene3D no description 2.6e-59
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0
    Coil coiled-coil 0
    ProfileScan Haem peroxidase, plant/fungal/bacterial 73.996
    superfamily Haem peroxidase 2.1e-107
    HMMPfam Haem peroxidase, plant/fungal/bacterial 7.5e-78

    See the detailed result >

    AT4G11290.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G05260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR